Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2042

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2041 and DVU2042 are separated by 61 nucleotidesDVU2042 and DVU2043 are separated by 68 nucleotides DVU2041: DVU2041 - conserved hypothetical protein (TIGR), at 2,118,990 to 2,119,985 DVU2041 DVU2042: DVU2042 - Fic family protein (TIGR), at 2,120,047 to 2,120,793 DVU2042 DVU2043: DVU2043 - conserved hypothetical protein (TIGR), at 2,120,862 to 2,122,463 DVU2043 Position (kb) 2120 2121Strain fitness (log2 ratio) -1 0 1at 2119.127 kb on + strand, within DVU2041at 2119.180 kb on + strand, within DVU2041at 2119.194 kb on - strand, within DVU2041at 2119.264 kb on + strand, within DVU2041at 2119.267 kb on - strand, within DVU2041at 2119.271 kb on + strand, within DVU2041at 2119.272 kb on - strand, within DVU2041at 2119.272 kb on - strand, within DVU2041at 2119.338 kb on + strand, within DVU2041at 2119.474 kb on + strand, within DVU2041at 2119.474 kb on + strand, within DVU2041at 2119.474 kb on - strand, within DVU2041at 2119.488 kb on - strand, within DVU2041at 2119.492 kb on + strand, within DVU2041at 2119.521 kb on - strand, within DVU2041at 2119.530 kb on - strand, within DVU2041at 2119.543 kb on - strand, within DVU2041at 2119.623 kb on + strand, within DVU2041at 2119.638 kb on + strand, within DVU2041at 2119.682 kb on + strand, within DVU2041at 2119.723 kb on - strand, within DVU2041at 2119.756 kb on - strand, within DVU2041at 2119.863 kb on + strand, within DVU2041at 2119.901 kb on - strandat 2119.933 kb on + strandat 2119.940 kb on - strandat 2119.948 kb on - strandat 2120.085 kb on + strandat 2120.361 kb on - strand, within DVU2042at 2120.398 kb on - strand, within DVU2042at 2120.402 kb on + strand, within DVU2042at 2120.497 kb on + strand, within DVU2042at 2120.634 kb on + strand, within DVU2042at 2120.640 kb on - strand, within DVU2042at 2120.685 kb on + strand, within DVU2042at 2120.693 kb on - strand, within DVU2042at 2120.778 kb on + strandat 2120.827 kb on - strandat 2120.867 kb on - strandat 2120.937 kb on - strandat 2120.960 kb on - strandat 2121.025 kb on - strand, within DVU2043at 2121.073 kb on + strand, within DVU2043at 2121.097 kb on + strand, within DVU2043at 2121.105 kb on - strand, within DVU2043at 2121.105 kb on - strand, within DVU2043at 2121.189 kb on + strand, within DVU2043at 2121.205 kb on + strand, within DVU2043at 2121.247 kb on - strand, within DVU2043at 2121.481 kb on + strand, within DVU2043at 2121.482 kb on + strand, within DVU2043at 2121.490 kb on - strand, within DVU2043at 2121.571 kb on + strand, within DVU2043at 2121.571 kb on + strand, within DVU2043at 2121.641 kb on + strand, within DVU2043at 2121.641 kb on + strand, within DVU2043at 2121.651 kb on - strand, within DVU2043at 2121.742 kb on - strand, within DVU2043

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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2,119,127 + DVU2041 0.14 -0.3
2,119,180 + DVU2041 0.19 -1.3
2,119,194 - DVU2041 0.20 +0.5
2,119,264 + DVU2041 0.28 -0.3
2,119,267 - DVU2041 0.28 +1.0
2,119,271 + DVU2041 0.28 +0.7
2,119,272 - DVU2041 0.28 -0.3
2,119,272 - DVU2041 0.28 -0.1
2,119,338 + DVU2041 0.35 +1.0
2,119,474 + DVU2041 0.49 -0.0
2,119,474 + DVU2041 0.49 -0.8
2,119,474 - DVU2041 0.49 -0.8
2,119,488 - DVU2041 0.50 -0.1
2,119,492 + DVU2041 0.50 -0.2
2,119,521 - DVU2041 0.53 -0.5
2,119,530 - DVU2041 0.54 +1.0
2,119,543 - DVU2041 0.56 -0.4
2,119,623 + DVU2041 0.64 +0.3
2,119,638 + DVU2041 0.65 -0.3
2,119,682 + DVU2041 0.69 -0.4
2,119,723 - DVU2041 0.74 +0.1
2,119,756 - DVU2041 0.77 -0.2
2,119,863 + DVU2041 0.88 -0.9
2,119,901 - -0.2
2,119,933 + +0.2
2,119,940 - -0.2
2,119,948 - -0.6
2,120,085 + -0.3
2,120,361 - DVU2042 0.42 +0.2
2,120,398 - DVU2042 0.47 -0.1
2,120,402 + DVU2042 0.48 -0.2
2,120,497 + DVU2042 0.60 +0.1
2,120,634 + DVU2042 0.79 -0.0
2,120,640 - DVU2042 0.79 -0.4
2,120,685 + DVU2042 0.85 -0.2
2,120,693 - DVU2042 0.86 +1.0
2,120,778 + -0.2
2,120,827 - +0.1
2,120,867 - -0.8
2,120,937 - +0.1
2,120,960 - -0.5
2,121,025 - DVU2043 0.10 -0.1
2,121,073 + DVU2043 0.13 +1.2
2,121,097 + DVU2043 0.15 +1.1
2,121,105 - DVU2043 0.15 +0.1
2,121,105 - DVU2043 0.15 -0.5
2,121,189 + DVU2043 0.20 +0.4
2,121,205 + DVU2043 0.21 -0.3
2,121,247 - DVU2043 0.24 -0.3
2,121,481 + DVU2043 0.39 -0.5
2,121,482 + DVU2043 0.39 -0.1
2,121,490 - DVU2043 0.39 -0.4
2,121,571 + DVU2043 0.44 +0.1
2,121,571 + DVU2043 0.44 +0.2
2,121,641 + DVU2043 0.49 +0.0
2,121,641 + DVU2043 0.49 -0.1
2,121,651 - DVU2043 0.49 +0.8
2,121,742 - DVU2043 0.55 +0.2

Or see this region's nucleotide sequence