Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1881

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1880 and phoH are separated by 161 nucleotidesphoH and DVU1882 are separated by 94 nucleotides DVU1880: DVU1880 - hypothetical protein (TIGR), at 1,948,764 to 1,949,405 DVU1880 DVU1881: phoH - phoH family protein (TIGR), at 1,949,567 to 1,950,583 phoH DVU1882: DVU1882 - HDIG domain protein (TIGR), at 1,950,678 to 1,953,038 DVU1882 Position (kb) 1949 1950 1951Strain fitness (log2 ratio) -2 -1 0 1at 1948.708 kb on - strandat 1948.743 kb on - strandat 1948.762 kb on + strandat 1948.762 kb on + strandat 1948.769 kb on - strandat 1948.955 kb on - strand, within DVU1880at 1949.135 kb on + strand, within DVU1880at 1949.178 kb on - strand, within DVU1880at 1949.215 kb on + strand, within DVU1880at 1949.228 kb on - strand, within DVU1880at 1949.250 kb on - strand, within DVU1880at 1949.262 kb on - strand, within DVU1880at 1949.344 kb on - strandat 1949.385 kb on + strandat 1949.441 kb on - strandat 1949.540 kb on + strandat 1949.635 kb on - strandat 1949.662 kb on - strandat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.791 kb on + strand, within phoHat 1949.799 kb on - strand, within phoHat 1949.799 kb on - strand, within phoHat 1949.822 kb on + strand, within phoHat 1949.825 kb on - strand, within phoHat 1949.833 kb on + strand, within phoHat 1950.036 kb on + strand, within phoHat 1950.054 kb on - strand, within phoHat 1950.074 kb on + strand, within phoHat 1950.150 kb on - strand, within phoHat 1950.176 kb on - strand, within phoHat 1950.227 kb on - strand, within phoHat 1950.271 kb on + strand, within phoHat 1950.299 kb on + strand, within phoHat 1950.322 kb on + strand, within phoHat 1950.410 kb on - strand, within phoHat 1950.523 kb on + strandat 1950.635 kb on + strandat 1950.730 kb on - strandat 1950.916 kb on + strand, within DVU1882at 1950.916 kb on + strand, within DVU1882at 1951.051 kb on + strand, within DVU1882at 1951.076 kb on + strand, within DVU1882at 1951.076 kb on + strand, within DVU1882at 1951.084 kb on - strand, within DVU1882at 1951.114 kb on + strand, within DVU1882at 1951.147 kb on + strand, within DVU1882at 1951.168 kb on + strand, within DVU1882at 1951.334 kb on + strand, within DVU1882at 1951.342 kb on - strand, within DVU1882at 1951.377 kb on + strand, within DVU1882

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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1,948,708 - -0.7
1,948,743 - -1.1
1,948,762 + -0.4
1,948,762 + -0.3
1,948,769 - -0.7
1,948,955 - DVU1880 0.30 -0.2
1,949,135 + DVU1880 0.58 -2.5
1,949,178 - DVU1880 0.64 -0.4
1,949,215 + DVU1880 0.70 -0.0
1,949,228 - DVU1880 0.72 +0.1
1,949,250 - DVU1880 0.76 +0.4
1,949,262 - DVU1880 0.78 -0.1
1,949,344 - -0.6
1,949,385 + +0.3
1,949,441 - -1.3
1,949,540 + -0.2
1,949,635 - +0.1
1,949,662 - -0.4
1,949,791 + phoH DVU1881 0.22 -0.3
1,949,791 + phoH DVU1881 0.22 +0.4
1,949,791 + phoH DVU1881 0.22 +0.1
1,949,791 + phoH DVU1881 0.22 +1.2
1,949,799 - phoH DVU1881 0.23 +0.1
1,949,799 - phoH DVU1881 0.23 -0.4
1,949,822 + phoH DVU1881 0.25 -0.4
1,949,825 - phoH DVU1881 0.25 +0.1
1,949,833 + phoH DVU1881 0.26 -0.2
1,950,036 + phoH DVU1881 0.46 +0.6
1,950,054 - phoH DVU1881 0.48 +0.7
1,950,074 + phoH DVU1881 0.50 -0.2
1,950,150 - phoH DVU1881 0.57 -0.2
1,950,176 - phoH DVU1881 0.60 -0.0
1,950,227 - phoH DVU1881 0.65 -0.9
1,950,271 + phoH DVU1881 0.69 -0.7
1,950,299 + phoH DVU1881 0.72 +0.6
1,950,322 + phoH DVU1881 0.74 -1.3
1,950,410 - phoH DVU1881 0.83 -0.2
1,950,523 + -0.2
1,950,635 + -0.6
1,950,730 - -0.2
1,950,916 + DVU1882 0.10 +0.0
1,950,916 + DVU1882 0.10 -0.5
1,951,051 + DVU1882 0.16 -0.4
1,951,076 + DVU1882 0.17 -0.0
1,951,076 + DVU1882 0.17 +0.0
1,951,084 - DVU1882 0.17 +0.3
1,951,114 + DVU1882 0.18 -0.1
1,951,147 + DVU1882 0.20 -1.1
1,951,168 + DVU1882 0.21 -0.8
1,951,334 + DVU1882 0.28 -0.2
1,951,342 - DVU1882 0.28 -0.3
1,951,377 + DVU1882 0.30 -0.2

Or see this region's nucleotide sequence