Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1654

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1653 and xerD overlap by 4 nucleotidesxerD and aspC4 are separated by 273 nucleotides DVU1653: DVU1653 - polyA polymerase family protein (TIGR), at 1,732,726 to 1,735,440 DVU1653 DVU1654: xerD - site-specific recombinase, phage integrase family (TIGR), at 1,735,437 to 1,736,321 xerD DVU1655: aspC4 - aminotransferase, classes I and II (TIGR), at 1,736,595 to 1,737,761 aspC4 Position (kb) 1735 1736 1737Strain fitness (log2 ratio) -2 -1 0 1at 1734.556 kb on - strand, within DVU1653at 1734.556 kb on - strand, within DVU1653at 1735.043 kb on - strand, within DVU1653at 1735.057 kb on - strand, within DVU1653at 1735.064 kb on + strand, within DVU1653at 1735.074 kb on - strand, within DVU1653at 1735.082 kb on - strand, within DVU1653at 1735.329 kb on - strandat 1735.405 kb on - strandat 1735.415 kb on - strandat 1735.503 kb on - strandat 1735.581 kb on + strand, within xerDat 1735.617 kb on + strand, within xerDat 1735.656 kb on - strand, within xerDat 1735.665 kb on + strand, within xerDat 1735.674 kb on + strand, within xerDat 1735.730 kb on - strand, within xerDat 1735.789 kb on - strand, within xerDat 1735.897 kb on - strand, within xerDat 1735.964 kb on + strand, within xerDat 1736.148 kb on - strand, within xerDat 1736.246 kb on + strandat 1736.274 kb on - strandat 1736.290 kb on - strandat 1736.373 kb on - strandat 1736.447 kb on + strandat 1736.476 kb on - strandat 1736.491 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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1,734,556 - DVU1653 0.67 +1.0
1,734,556 - DVU1653 0.67 +0.4
1,735,043 - DVU1653 0.85 +0.3
1,735,057 - DVU1653 0.86 +0.3
1,735,064 + DVU1653 0.86 +0.0
1,735,074 - DVU1653 0.86 +0.9
1,735,082 - DVU1653 0.87 -0.1
1,735,329 - -1.5
1,735,405 - +0.6
1,735,415 - +0.0
1,735,503 - -0.3
1,735,581 + xerD DVU1654 0.16 -1.5
1,735,617 + xerD DVU1654 0.20 -1.2
1,735,656 - xerD DVU1654 0.25 -0.4
1,735,665 + xerD DVU1654 0.26 -0.5
1,735,674 + xerD DVU1654 0.27 +0.1
1,735,730 - xerD DVU1654 0.33 -1.1
1,735,789 - xerD DVU1654 0.40 +0.3
1,735,897 - xerD DVU1654 0.52 +0.0
1,735,964 + xerD DVU1654 0.60 -0.7
1,736,148 - xerD DVU1654 0.80 -1.2
1,736,246 + -0.8
1,736,274 - -0.5
1,736,290 - -2.0
1,736,373 - -0.1
1,736,447 + -0.1
1,736,476 - -0.1
1,736,491 + -1.0

Or see this region's nucleotide sequence