Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1631

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfiA and ptsN are separated by 9 nucleotidesptsN and DVU1631 are separated by 8 nucleotidesDVU1631 and DVU1632 are separated by 28 nucleotidesDVU1632 and DVU1633 are separated by 1 nucleotidesDVU1633 and DVU1634 are separated by 25 nucleotides DVU1629: yfiA - ribosomal subunit interface protein (TIGR), at 1,713,942 to 1,714,481 yfiA DVU1630: ptsN - PTS system, IIA component (TIGR), at 1,714,491 to 1,714,940 ptsN DVU1631: DVU1631 - conserved hypothetical protein (TIGR), at 1,714,949 to 1,715,860 DVU1631 DVU1632: DVU1632 - PTS system, IIA component (TIGR), at 1,715,889 to 1,716,326 DVU1632 DVU1633: DVU1633 - PTS system, IIB component (TIGR), at 1,716,328 to 1,716,789 DVU1633 DVU1634: DVU1634 - membrane protein, putative (TIGR), at 1,716,815 to 1,717,486 DVU1634 Position (kb) 1714 1715 1716Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1714.137 kb on + strand, within yfiAat 1714.153 kb on - strand, within yfiAat 1714.280 kb on + strand, within yfiAat 1714.301 kb on - strand, within yfiAat 1714.301 kb on - strand, within yfiAat 1714.339 kb on - strand, within yfiAat 1714.461 kb on - strandat 1714.606 kb on - strand, within ptsNat 1714.654 kb on + strand, within ptsNat 1714.705 kb on + strand, within ptsNat 1714.943 kb on - strandat 1714.951 kb on + strandat 1714.970 kb on + strandat 1715.020 kb on + strandat 1715.028 kb on - strandat 1715.042 kb on + strand, within DVU1631at 1715.146 kb on + strand, within DVU1631at 1715.146 kb on + strand, within DVU1631at 1715.160 kb on - strand, within DVU1631at 1715.277 kb on + strand, within DVU1631at 1715.336 kb on + strand, within DVU1631at 1715.344 kb on - strand, within DVU1631at 1715.442 kb on + strand, within DVU1631at 1715.464 kb on - strand, within DVU1631at 1715.466 kb on + strand, within DVU1631at 1715.474 kb on - strand, within DVU1631at 1715.476 kb on + strand, within DVU1631at 1715.549 kb on + strand, within DVU1631at 1715.707 kb on + strand, within DVU1631at 1715.707 kb on + strand, within DVU1631at 1715.748 kb on + strand, within DVU1631at 1715.751 kb on + strand, within DVU1631at 1715.796 kb on - strandat 1715.900 kb on + strandat 1715.946 kb on + strand, within DVU1632at 1715.946 kb on + strand, within DVU1632at 1715.954 kb on - strand, within DVU1632at 1715.954 kb on - strand, within DVU1632at 1715.954 kb on - strand, within DVU1632at 1716.121 kb on - strand, within DVU1632at 1716.184 kb on + strand, within DVU1632at 1716.184 kb on + strand, within DVU1632at 1716.395 kb on - strand, within DVU1633at 1716.490 kb on - strand, within DVU1633at 1716.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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1,714,137 + yfiA DVU1629 0.36 -0.7
1,714,153 - yfiA DVU1629 0.39 -1.2
1,714,280 + yfiA DVU1629 0.63 +0.1
1,714,301 - yfiA DVU1629 0.66 -1.2
1,714,301 - yfiA DVU1629 0.66 -0.9
1,714,339 - yfiA DVU1629 0.74 -2.7
1,714,461 - -0.8
1,714,606 - ptsN DVU1630 0.26 -1.2
1,714,654 + ptsN DVU1630 0.36 +0.7
1,714,705 + ptsN DVU1630 0.48 +0.1
1,714,943 - -1.4
1,714,951 + -1.2
1,714,970 + -1.3
1,715,020 + -1.0
1,715,028 - +4.2
1,715,042 + DVU1631 0.10 -0.5
1,715,146 + DVU1631 0.22 -0.3
1,715,146 + DVU1631 0.22 -0.9
1,715,160 - DVU1631 0.23 -1.1
1,715,277 + DVU1631 0.36 -0.8
1,715,336 + DVU1631 0.42 +0.3
1,715,344 - DVU1631 0.43 -1.1
1,715,442 + DVU1631 0.54 -1.2
1,715,464 - DVU1631 0.56 -0.6
1,715,466 + DVU1631 0.57 -1.9
1,715,474 - DVU1631 0.58 -2.2
1,715,476 + DVU1631 0.58 -0.2
1,715,549 + DVU1631 0.66 -0.6
1,715,707 + DVU1631 0.83 -0.8
1,715,707 + DVU1631 0.83 -0.5
1,715,748 + DVU1631 0.88 +0.6
1,715,751 + DVU1631 0.88 +1.0
1,715,796 - -0.3
1,715,900 + -0.9
1,715,946 + DVU1632 0.13 -0.8
1,715,946 + DVU1632 0.13 -1.6
1,715,954 - DVU1632 0.15 -0.7
1,715,954 - DVU1632 0.15 -2.2
1,715,954 - DVU1632 0.15 -1.4
1,716,121 - DVU1632 0.53 -1.7
1,716,184 + DVU1632 0.67 -1.3
1,716,184 + DVU1632 0.67 -1.2
1,716,395 - DVU1633 0.15 +0.8
1,716,490 - DVU1633 0.35 +1.0
1,716,811 - -1.5

Or see this region's nucleotide sequence