Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1052

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntccmF and ccmE are separated by 87 nucleotidesccmE and DVU1052 are separated by 137 nucleotidesDVU1052 and DVU1054 are separated by 165 nucleotides DVU1050: ccmF - cytochrome c-type biogenesis protein CcmF (TIGR), at 1,151,185 to 1,153,080 ccmF DVU1051: ccmE - cytochrome c-type biogenesis protein CcmE (TIGR), at 1,153,168 to 1,153,581 ccmE DVU1052: DVU1052 - CBS domain protein (TIGR), at 1,153,719 to 1,154,783 DVU1052 DVU1054: DVU1054 - hydrolase, HAD-superfamily, subfamily IIIA (TIGR), at 1,154,949 to 1,155,587 DVU1054 Position (kb) 1153 1154 1155Strain fitness (log2 ratio) -1 0 1at 1153.129 kb on - strandat 1153.129 kb on - strandat 1153.153 kb on - strandat 1153.671 kb on + strandat 1153.671 kb on + strandat 1153.831 kb on + strand, within DVU1052at 1153.931 kb on - strand, within DVU1052at 1153.981 kb on + strand, within DVU1052at 1154.119 kb on - strand, within DVU1052at 1154.131 kb on - strand, within DVU1052at 1154.149 kb on - strand, within DVU1052at 1154.166 kb on + strand, within DVU1052at 1154.237 kb on - strand, within DVU1052at 1154.378 kb on - strand, within DVU1052at 1154.383 kb on - strand, within DVU1052at 1154.414 kb on - strand, within DVU1052at 1154.414 kb on - strand, within DVU1052at 1154.414 kb on - strand, within DVU1052at 1154.573 kb on + strand, within DVU1052at 1154.578 kb on - strand, within DVU1052at 1154.674 kb on + strand, within DVU1052at 1154.735 kb on - strandat 1154.780 kb on - strandat 1154.845 kb on - strandat 1155.664 kb on + strandat 1155.684 kb on + strandat 1155.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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1,153,129 - -0.0
1,153,129 - -0.2
1,153,153 - -0.4
1,153,671 + -0.4
1,153,671 + -0.8
1,153,831 + DVU1052 0.11 -0.6
1,153,931 - DVU1052 0.20 +0.9
1,153,981 + DVU1052 0.25 -0.7
1,154,119 - DVU1052 0.38 -0.4
1,154,131 - DVU1052 0.39 -0.3
1,154,149 - DVU1052 0.40 +0.0
1,154,166 + DVU1052 0.42 -0.0
1,154,237 - DVU1052 0.49 +0.7
1,154,378 - DVU1052 0.62 -0.0
1,154,383 - DVU1052 0.62 +0.1
1,154,414 - DVU1052 0.65 +0.1
1,154,414 - DVU1052 0.65 -0.2
1,154,414 - DVU1052 0.65 -0.0
1,154,573 + DVU1052 0.80 -0.2
1,154,578 - DVU1052 0.81 -0.3
1,154,674 + DVU1052 0.90 -0.6
1,154,735 - +1.7
1,154,780 - -0.1
1,154,845 - -0.2
1,155,664 + -0.5
1,155,684 + +1.0
1,155,744 - -0.9

Or see this region's nucleotide sequence