Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.907.1 and Xcc-8004.908.1 are separated by 122 nucleotides Xcc-8004.908.1 and Xcc-8004.909.1 are separated by 321 nucleotides
Xcc-8004.907.1: Xcc-8004.907.1 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 851,073 to 852,284
Xcc-8004.907.1
Xcc-8004.908.1: Xcc-8004.908.1 - Type I secretion system, outer membrane component LapE, at 852,407 to 853,468
Xcc-8004.908.1
Xcc-8004.909.1: Xcc-8004.909.1 - FIG01211604: hypothetical protein, at 853,790 to 854,773
Xcc-8004.909.1
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.577 kb on + strand, within Xcc-8004.907.1 at 851.577 kb on + strand, within Xcc-8004.907.1 at 851.578 kb on - strand, within Xcc-8004.907.1 at 851.607 kb on + strand, within Xcc-8004.907.1 at 851.608 kb on - strand, within Xcc-8004.907.1 at 851.608 kb on - strand, within Xcc-8004.907.1 at 851.658 kb on + strand, within Xcc-8004.907.1 at 851.698 kb on - strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.833 kb on - strand, within Xcc-8004.907.1 at 851.973 kb on + strand, within Xcc-8004.907.1 at 851.973 kb on + strand, within Xcc-8004.907.1 at 851.974 kb on - strand, within Xcc-8004.907.1 at 851.974 kb on - strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.032 kb on - strand, within Xcc-8004.907.1 at 852.032 kb on - strand, within Xcc-8004.907.1 at 852.032 kb on - strand, within Xcc-8004.907.1 at 852.082 kb on - strand, within Xcc-8004.907.1 at 852.082 kb on - strand, within Xcc-8004.907.1 at 852.282 kb on + strand at 852.346 kb on - strand at 852.346 kb on - strand at 852.395 kb on + strand at 852.395 kb on + strand at 852.396 kb on - strand at 852.396 kb on - strand at 852.438 kb on + strand at 852.438 kb on + strand at 852.438 kb on + strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.484 kb on - strand at 852.513 kb on + strand at 852.513 kb on + strand at 852.513 kb on + strand at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 853.021 kb on + strand, within Xcc-8004.908.1 at 853.021 kb on + strand, within Xcc-8004.908.1 at 853.022 kb on - strand, within Xcc-8004.908.1 at 853.039 kb on + strand, within Xcc-8004.908.1 at 853.050 kb on + strand, within Xcc-8004.908.1 at 853.051 kb on - strand, within Xcc-8004.908.1 at 853.116 kb on + strand, within Xcc-8004.908.1 at 853.117 kb on - strand, within Xcc-8004.908.1 at 853.117 kb on - strand, within Xcc-8004.908.1 at 853.129 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.249 kb on - strand, within Xcc-8004.908.1 at 853.249 kb on - strand, within Xcc-8004.908.1 at 853.296 kb on + strand, within Xcc-8004.908.1 at 853.296 kb on + strand, within Xcc-8004.908.1 at 853.297 kb on - strand, within Xcc-8004.908.1 at 853.363 kb on + strand at 853.364 kb on - strand at 853.480 kb on + strand at 853.481 kb on - strand at 853.600 kb on + strand at 853.601 kb on - strand at 853.672 kb on + strand at 853.672 kb on + strand at 853.673 kb on - strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.701 kb on + strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.732 kb on + strand at 853.732 kb on + strand at 853.732 kb on + strand at 853.733 kb on - strand at 853.733 kb on - strand at 853.733 kb on - strand at 853.740 kb on + strand at 853.741 kb on - strand at 853.778 kb on + strand at 853.821 kb on + strand at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.437 kb on + strand, within Xcc-8004.909.1 at 854.468 kb on + strand, within Xcc-8004.909.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 851,433 + Xcc-8004.907.1 0.30 -0.3 851,433 + Xcc-8004.907.1 0.30 -1.1 851,433 + Xcc-8004.907.1 0.30 -0.2 851,433 + Xcc-8004.907.1 0.30 +1.5 851,434 - Xcc-8004.907.1 0.30 +1.3 851,434 - Xcc-8004.907.1 0.30 -1.3 851,434 - Xcc-8004.907.1 0.30 +0.0 851,434 - Xcc-8004.907.1 0.30 -1.0 851,434 - Xcc-8004.907.1 0.30 -0.6 851,434 - Xcc-8004.907.1 0.30 +1.7 851,577 + Xcc-8004.907.1 0.42 +0.1 851,577 + Xcc-8004.907.1 0.42 +0.3 851,578 - Xcc-8004.907.1 0.42 +0.8 851,607 + Xcc-8004.907.1 0.44 -1.0 851,608 - Xcc-8004.907.1 0.44 -0.1 851,608 - Xcc-8004.907.1 0.44 -0.2 851,658 + Xcc-8004.907.1 0.48 -0.7 851,698 - Xcc-8004.907.1 0.52 +0.7 851,709 + Xcc-8004.907.1 0.52 -0.3 851,709 + Xcc-8004.907.1 0.52 +1.2 851,709 + Xcc-8004.907.1 0.52 -1.3 851,709 + Xcc-8004.907.1 0.52 +0.3 851,709 + Xcc-8004.907.1 0.52 +1.0 851,709 + Xcc-8004.907.1 0.52 +0.7 851,709 + Xcc-8004.907.1 0.52 +0.3 851,709 + Xcc-8004.907.1 0.52 -1.7 851,709 + Xcc-8004.907.1 0.52 +0.1 851,709 + Xcc-8004.907.1 0.52 +0.1 851,710 - Xcc-8004.907.1 0.53 -1.0 851,710 - Xcc-8004.907.1 0.53 -0.6 851,710 - Xcc-8004.907.1 0.53 +0.1 851,710 - Xcc-8004.907.1 0.53 -0.4 851,715 + Xcc-8004.907.1 0.53 -0.8 851,715 + Xcc-8004.907.1 0.53 -1.2 851,715 + Xcc-8004.907.1 0.53 -1.4 851,715 + Xcc-8004.907.1 0.53 -2.1 851,715 + Xcc-8004.907.1 0.53 +0.7 851,716 - Xcc-8004.907.1 0.53 -0.7 851,716 - Xcc-8004.907.1 0.53 -1.0 851,716 - Xcc-8004.907.1 0.53 -1.0 851,716 - Xcc-8004.907.1 0.53 -0.7 851,716 - Xcc-8004.907.1 0.53 -0.8 851,833 - Xcc-8004.907.1 0.63 +0.3 851,973 + Xcc-8004.907.1 0.74 -0.4 851,973 + Xcc-8004.907.1 0.74 -0.1 851,974 - Xcc-8004.907.1 0.74 -1.0 851,974 - Xcc-8004.907.1 0.74 +2.2 852,031 + Xcc-8004.907.1 0.79 -0.5 852,031 + Xcc-8004.907.1 0.79 -1.1 852,031 + Xcc-8004.907.1 0.79 +2.5 852,031 + Xcc-8004.907.1 0.79 +0.2 852,031 + Xcc-8004.907.1 0.79 -0.2 852,031 + Xcc-8004.907.1 0.79 -0.1 852,031 + Xcc-8004.907.1 0.79 -0.5 852,031 + Xcc-8004.907.1 0.79 +1.2 852,031 + Xcc-8004.907.1 0.79 +1.4 852,032 - Xcc-8004.907.1 0.79 +0.5 852,032 - Xcc-8004.907.1 0.79 +1.0 852,032 - Xcc-8004.907.1 0.79 +0.0 852,082 - Xcc-8004.907.1 0.83 -0.7 852,082 - Xcc-8004.907.1 0.83 -0.2 852,282 + +0.2 852,346 - -0.1 852,346 - +0.3 852,395 + +1.3 852,395 + +1.2 852,396 - -0.1 852,396 - +0.0 852,438 + -0.0 852,438 + -0.5 852,438 + -1.0 852,439 - -0.3 852,439 - +1.2 852,439 - +0.9 852,439 - -0.8 852,439 - -0.5 852,439 - -0.4 852,439 - -1.8 852,484 - -1.9 852,513 + -0.3 852,513 + +2.0 852,513 + +1.0 852,514 - Xcc-8004.908.1 0.10 +0.1 852,514 - Xcc-8004.908.1 0.10 -0.9 852,514 - Xcc-8004.908.1 0.10 +1.1 852,514 - Xcc-8004.908.1 0.10 +0.9 852,514 - Xcc-8004.908.1 0.10 +0.3 852,514 - Xcc-8004.908.1 0.10 +1.2 852,514 - Xcc-8004.908.1 0.10 +1.6 853,021 + Xcc-8004.908.1 0.58 -0.3 853,021 + Xcc-8004.908.1 0.58 +0.2 853,022 - Xcc-8004.908.1 0.58 -1.8 853,039 + Xcc-8004.908.1 0.60 +0.5 853,050 + Xcc-8004.908.1 0.61 +0.2 853,051 - Xcc-8004.908.1 0.61 -0.3 853,116 + Xcc-8004.908.1 0.67 -0.8 853,117 - Xcc-8004.908.1 0.67 +0.6 853,117 - Xcc-8004.908.1 0.67 -0.7 853,129 + Xcc-8004.908.1 0.68 +1.7 853,200 + Xcc-8004.908.1 0.75 -0.4 853,200 + Xcc-8004.908.1 0.75 -0.7 853,200 + Xcc-8004.908.1 0.75 +2.7 853,200 + Xcc-8004.908.1 0.75 +0.6 853,201 - Xcc-8004.908.1 0.75 -0.9 853,201 - Xcc-8004.908.1 0.75 +0.6 853,201 - Xcc-8004.908.1 0.75 +0.2 853,201 - Xcc-8004.908.1 0.75 -0.4 853,201 - Xcc-8004.908.1 0.75 -0.5 853,249 - Xcc-8004.908.1 0.79 -2.3 853,249 - Xcc-8004.908.1 0.79 -0.1 853,296 + Xcc-8004.908.1 0.84 +0.6 853,296 + Xcc-8004.908.1 0.84 -0.5 853,297 - Xcc-8004.908.1 0.84 +1.0 853,363 + +1.0 853,364 - +1.1 853,480 + +0.2 853,481 - -0.5 853,600 + -0.4 853,601 - -0.0 853,672 + -0.1 853,672 + +0.7 853,673 - -2.0 853,675 + -1.0 853,675 + +0.9 853,675 + -0.3 853,675 + +1.7 853,675 + +2.7 853,675 + +1.7 853,675 + -0.3 853,675 + +0.4 853,675 + +2.7 853,675 + +1.7 853,676 - -0.1 853,676 - +0.4 853,676 - +0.9 853,676 - -0.5 853,676 - -0.4 853,676 - +0.6 853,676 - -0.9 853,676 - -0.1 853,680 + +2.7 853,680 + +2.7 853,680 + +2.7 853,680 + +0.1 853,680 + +0.3 853,680 + -1.3 853,680 + +2.7 853,681 - -0.7 853,681 - +0.4 853,681 - +0.5 853,681 - +0.6 853,681 - +0.1 853,681 - -1.3 853,681 - +0.6 853,681 - +2.0 853,681 - +0.2 853,681 - +1.0 853,681 - +0.6 853,681 - -1.1 853,681 - -0.9 853,681 - +1.1 853,681 - +1.5 853,681 - -1.6 853,681 - -0.5 853,681 - +0.2 853,681 - +0.3 853,681 - +0.1 853,681 - +0.0 853,681 - +1.4 853,681 - +0.4 853,681 - +0.7 853,681 - -1.2 853,681 - +0.5 853,681 - +0.2 853,701 + +2.7 853,702 - -0.1 853,702 - -1.8 853,702 - +1.1 853,702 - +1.0 853,732 + -0.8 853,732 + -0.8 853,732 + +2.7 853,733 - +0.7 853,733 - +0.1 853,733 - -1.7 853,740 + -2.2 853,741 - +1.8 853,778 + +2.3 853,821 + -2.9 854,189 + Xcc-8004.909.1 0.41 -0.6 854,189 + Xcc-8004.909.1 0.41 -0.8 854,189 + Xcc-8004.909.1 0.41 +0.6 854,190 - Xcc-8004.909.1 0.41 +0.7 854,190 - Xcc-8004.909.1 0.41 -0.9 854,190 - Xcc-8004.909.1 0.41 -2.0 854,307 + Xcc-8004.909.1 0.53 -0.0 854,307 + Xcc-8004.909.1 0.53 -2.1 854,307 + Xcc-8004.909.1 0.53 +1.8 854,307 + Xcc-8004.909.1 0.53 -0.7 854,307 + Xcc-8004.909.1 0.53 +2.5 854,307 + Xcc-8004.909.1 0.53 -0.2 854,307 + Xcc-8004.909.1 0.53 -1.2 854,307 + Xcc-8004.909.1 0.53 +0.5 854,308 - Xcc-8004.909.1 0.53 -0.0 854,308 - Xcc-8004.909.1 0.53 +3.3 854,308 - Xcc-8004.909.1 0.53 +1.1 854,437 + Xcc-8004.909.1 0.66 +0.2 854,468 + Xcc-8004.909.1 0.69 +0.6
Or see this region's nucleotide sequence