Experiment: R2A with Vogels_fungal_media 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5286.1 and Xcc-8004.5288.1 are separated by 311 nucleotides
Xcc-8004.5286.1: Xcc-8004.5286.1 - Benzoate transport protein, at 5,025,683 to 5,026,867
Xcc-8004.5286.1
Xcc-8004.5288.1: Xcc-8004.5288.1 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 5,027,179 to 5,029,083
Xcc-8004.5288.1
Position (kb) 5025
5026
5027 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5025.325 kb on + strand at 5025.433 kb on - strand at 5025.484 kb on - strand at 5025.484 kb on - strand at 5025.484 kb on - strand at 5025.502 kb on + strand at 5025.502 kb on + strand at 5025.503 kb on - strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.522 kb on + strand at 5025.523 kb on - strand at 5025.523 kb on - strand at 5025.550 kb on + strand at 5025.550 kb on + strand at 5025.550 kb on + strand at 5025.550 kb on + strand at 5025.551 kb on - strand at 5025.551 kb on - strand at 5025.551 kb on - strand at 5025.602 kb on + strand at 5025.602 kb on + strand at 5025.602 kb on + strand at 5025.603 kb on - strand at 5025.603 kb on - strand at 5025.608 kb on + strand at 5025.621 kb on + strand at 5025.621 kb on + strand at 5025.621 kb on + strand at 5025.622 kb on - strand at 5025.622 kb on - strand at 5025.622 kb on - strand at 5025.651 kb on + strand at 5025.652 kb on - strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.750 kb on + strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5025.751 kb on - strand at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.169 kb on + strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.170 kb on - strand, within Xcc-8004.5286.1 at 5026.199 kb on + strand, within Xcc-8004.5286.1 at 5026.200 kb on - strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.350 kb on + strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.351 kb on - strand, within Xcc-8004.5286.1 at 5026.413 kb on - strand, within Xcc-8004.5286.1 at 5026.414 kb on + strand, within Xcc-8004.5286.1 at 5026.414 kb on + strand, within Xcc-8004.5286.1 at 5026.414 kb on + strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.415 kb on - strand, within Xcc-8004.5286.1 at 5026.459 kb on + strand, within Xcc-8004.5286.1 at 5026.460 kb on - strand, within Xcc-8004.5286.1 at 5026.460 kb on - strand, within Xcc-8004.5286.1 at 5026.485 kb on - strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.589 kb on + strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.590 kb on - strand, within Xcc-8004.5286.1 at 5026.933 kb on + strand at 5026.933 kb on + strand at 5026.934 kb on - strand at 5026.934 kb on - strand at 5026.934 kb on - strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.048 kb on + strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.049 kb on - strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.060 kb on + strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.061 kb on - strand at 5027.067 kb on + strand at 5027.067 kb on + strand at 5027.068 kb on - strand at 5027.068 kb on - strand at 5027.068 kb on - strand at 5027.180 kb on + strand at 5027.180 kb on + strand at 5027.180 kb on + strand at 5027.181 kb on - strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.200 kb on + strand at 5027.201 kb on - strand at 5027.201 kb on - strand at 5027.261 kb on + strand at 5027.261 kb on + strand at 5027.262 kb on - strand at 5027.262 kb on - strand at 5027.262 kb on - strand at 5027.303 kb on + strand at 5027.303 kb on + strand at 5027.303 kb on + strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.304 kb on - strand at 5027.372 kb on + strand, within Xcc-8004.5288.1 at 5027.372 kb on + strand, within Xcc-8004.5288.1 at 5027.372 kb on + strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.373 kb on - strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.764 kb on + strand, within Xcc-8004.5288.1 at 5027.765 kb on - strand, within Xcc-8004.5288.1 at 5027.765 kb on - strand, within Xcc-8004.5288.1
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X remove 5,025,325 + +0.1 5,025,433 - +0.8 5,025,484 - -0.2 5,025,484 - -0.1 5,025,484 - -0.1 5,025,502 + +0.0 5,025,502 + +0.2 5,025,503 - -1.7 5,025,522 + +0.8 5,025,522 + +1.2 5,025,522 + -0.1 5,025,522 + +0.4 5,025,522 + -1.2 5,025,522 + -1.0 5,025,523 - +0.6 5,025,523 - +0.0 5,025,550 + +0.6 5,025,550 + +1.0 5,025,550 + -0.3 5,025,550 + +0.1 5,025,551 - +0.2 5,025,551 - -1.2 5,025,551 - +0.5 5,025,602 + +0.2 5,025,602 + -0.4 5,025,602 + +0.0 5,025,603 - +0.1 5,025,603 - -1.0 5,025,608 + +0.6 5,025,621 + +0.0 5,025,621 + -0.5 5,025,621 + +2.2 5,025,622 - -2.4 5,025,622 - +0.4 5,025,622 - +1.0 5,025,651 + -0.9 5,025,652 - -0.7 5,025,750 + +0.5 5,025,750 + -1.3 5,025,750 + +0.4 5,025,750 + +0.5 5,025,750 + -1.5 5,025,750 + +1.3 5,025,750 + -0.3 5,025,750 + -0.1 5,025,750 + +1.6 5,025,750 + +0.3 5,025,750 + +0.4 5,025,750 + +0.5 5,025,750 + +0.8 5,025,750 + +0.0 5,025,750 + +0.2 5,025,750 + -0.4 5,025,750 + +0.0 5,025,750 + +0.4 5,025,750 + +0.6 5,025,751 - -0.0 5,025,751 - -0.3 5,025,751 - +0.7 5,025,751 - +1.8 5,025,751 - -0.3 5,025,751 - -0.3 5,025,751 - +0.9 5,025,751 - +1.4 5,025,751 - +0.2 5,025,751 - +0.9 5,025,751 - +1.3 5,025,751 - +0.9 5,026,169 + Xcc-8004.5286.1 0.41 -0.2 5,026,169 + Xcc-8004.5286.1 0.41 -1.6 5,026,169 + Xcc-8004.5286.1 0.41 +4.3 5,026,169 + Xcc-8004.5286.1 0.41 +0.3 5,026,169 + Xcc-8004.5286.1 0.41 +0.5 5,026,169 + Xcc-8004.5286.1 0.41 +0.8 5,026,169 + Xcc-8004.5286.1 0.41 +0.5 5,026,169 + Xcc-8004.5286.1 0.41 -0.1 5,026,169 + Xcc-8004.5286.1 0.41 -0.9 5,026,169 + Xcc-8004.5286.1 0.41 +1.0 5,026,169 + Xcc-8004.5286.1 0.41 -0.4 5,026,169 + Xcc-8004.5286.1 0.41 +0.3 5,026,170 - Xcc-8004.5286.1 0.41 +0.9 5,026,170 - Xcc-8004.5286.1 0.41 -1.3 5,026,170 - Xcc-8004.5286.1 0.41 -0.2 5,026,170 - Xcc-8004.5286.1 0.41 +0.3 5,026,170 - Xcc-8004.5286.1 0.41 +0.9 5,026,170 - Xcc-8004.5286.1 0.41 +0.2 5,026,170 - Xcc-8004.5286.1 0.41 +0.5 5,026,170 - Xcc-8004.5286.1 0.41 +0.4 5,026,170 - Xcc-8004.5286.1 0.41 -0.5 5,026,170 - Xcc-8004.5286.1 0.41 +1.2 5,026,170 - Xcc-8004.5286.1 0.41 +0.1 5,026,170 - Xcc-8004.5286.1 0.41 +0.4 5,026,170 - Xcc-8004.5286.1 0.41 +0.2 5,026,199 + Xcc-8004.5286.1 0.44 +0.6 5,026,200 - Xcc-8004.5286.1 0.44 +1.0 5,026,350 + Xcc-8004.5286.1 0.56 +0.2 5,026,350 + Xcc-8004.5286.1 0.56 -0.3 5,026,350 + Xcc-8004.5286.1 0.56 -0.7 5,026,350 + Xcc-8004.5286.1 0.56 +1.2 5,026,350 + Xcc-8004.5286.1 0.56 -0.3 5,026,350 + Xcc-8004.5286.1 0.56 +0.2 5,026,351 - Xcc-8004.5286.1 0.56 +0.0 5,026,351 - Xcc-8004.5286.1 0.56 +0.7 5,026,351 - Xcc-8004.5286.1 0.56 +0.3 5,026,351 - Xcc-8004.5286.1 0.56 -1.9 5,026,351 - Xcc-8004.5286.1 0.56 +0.0 5,026,351 - Xcc-8004.5286.1 0.56 +1.7 5,026,413 - Xcc-8004.5286.1 0.62 +0.9 5,026,414 + Xcc-8004.5286.1 0.62 -0.9 5,026,414 + Xcc-8004.5286.1 0.62 +0.5 5,026,414 + Xcc-8004.5286.1 0.62 +0.7 5,026,415 - Xcc-8004.5286.1 0.62 -0.5 5,026,415 - Xcc-8004.5286.1 0.62 +0.3 5,026,415 - Xcc-8004.5286.1 0.62 +0.2 5,026,415 - Xcc-8004.5286.1 0.62 +1.1 5,026,415 - Xcc-8004.5286.1 0.62 +0.8 5,026,415 - Xcc-8004.5286.1 0.62 -2.1 5,026,415 - Xcc-8004.5286.1 0.62 -0.7 5,026,415 - Xcc-8004.5286.1 0.62 +3.7 5,026,415 - Xcc-8004.5286.1 0.62 -1.0 5,026,415 - Xcc-8004.5286.1 0.62 +0.4 5,026,459 + Xcc-8004.5286.1 0.65 -0.7 5,026,460 - Xcc-8004.5286.1 0.66 -2.3 5,026,460 - Xcc-8004.5286.1 0.66 -0.1 5,026,485 - Xcc-8004.5286.1 0.68 -0.1 5,026,589 + Xcc-8004.5286.1 0.76 -0.9 5,026,589 + Xcc-8004.5286.1 0.76 -0.1 5,026,589 + Xcc-8004.5286.1 0.76 +0.3 5,026,589 + Xcc-8004.5286.1 0.76 +1.1 5,026,589 + Xcc-8004.5286.1 0.76 -1.7 5,026,589 + Xcc-8004.5286.1 0.76 -0.4 5,026,589 + Xcc-8004.5286.1 0.76 +0.2 5,026,589 + Xcc-8004.5286.1 0.76 +0.4 5,026,589 + Xcc-8004.5286.1 0.76 +0.9 5,026,589 + Xcc-8004.5286.1 0.76 +0.4 5,026,589 + Xcc-8004.5286.1 0.76 -0.8 5,026,589 + Xcc-8004.5286.1 0.76 +0.2 5,026,589 + Xcc-8004.5286.1 0.76 -0.9 5,026,589 + Xcc-8004.5286.1 0.76 +0.2 5,026,589 + Xcc-8004.5286.1 0.76 +0.4 5,026,589 + Xcc-8004.5286.1 0.76 -0.3 5,026,589 + Xcc-8004.5286.1 0.76 -0.3 5,026,589 + Xcc-8004.5286.1 0.76 +0.9 5,026,589 + Xcc-8004.5286.1 0.76 -0.9 5,026,589 + Xcc-8004.5286.1 0.76 -0.1 5,026,589 + Xcc-8004.5286.1 0.76 -0.2 5,026,589 + Xcc-8004.5286.1 0.76 +0.6 5,026,590 - Xcc-8004.5286.1 0.77 +1.0 5,026,590 - Xcc-8004.5286.1 0.77 +0.9 5,026,590 - Xcc-8004.5286.1 0.77 -0.6 5,026,590 - Xcc-8004.5286.1 0.77 -0.6 5,026,590 - Xcc-8004.5286.1 0.77 -0.6 5,026,590 - Xcc-8004.5286.1 0.77 -0.1 5,026,590 - Xcc-8004.5286.1 0.77 +0.5 5,026,590 - Xcc-8004.5286.1 0.77 +0.9 5,026,590 - Xcc-8004.5286.1 0.77 +0.1 5,026,590 - Xcc-8004.5286.1 0.77 -0.6 5,026,590 - Xcc-8004.5286.1 0.77 +0.1 5,026,590 - Xcc-8004.5286.1 0.77 +0.8 5,026,590 - Xcc-8004.5286.1 0.77 -0.4 5,026,590 - Xcc-8004.5286.1 0.77 -0.0 5,026,933 + -1.9 5,026,933 + -2.2 5,026,934 - +0.6 5,026,934 - +0.4 5,026,934 - -0.6 5,027,048 + +1.0 5,027,048 + +0.0 5,027,048 + +0.1 5,027,048 + +0.2 5,027,048 + -1.5 5,027,049 - -1.5 5,027,049 - -0.3 5,027,049 - -1.0 5,027,049 - -0.7 5,027,049 - -1.0 5,027,049 - -0.5 5,027,049 - -0.6 5,027,049 - -0.5 5,027,060 + +1.4 5,027,060 + -0.0 5,027,060 + -0.3 5,027,060 + +0.2 5,027,060 + -0.0 5,027,060 + -0.3 5,027,061 - -0.6 5,027,061 - -0.3 5,027,061 - +0.3 5,027,061 - +0.3 5,027,061 - -1.3 5,027,067 + -0.3 5,027,067 + -1.9 5,027,068 - -1.5 5,027,068 - +0.9 5,027,068 - -0.3 5,027,180 + +0.9 5,027,180 + -0.1 5,027,180 + -1.6 5,027,181 - -1.8 5,027,200 + -0.4 5,027,200 + -0.7 5,027,200 + +0.5 5,027,200 + -0.4 5,027,200 + -0.5 5,027,201 - -0.1 5,027,201 - -0.3 5,027,261 + +0.9 5,027,261 + +0.1 5,027,262 - -0.2 5,027,262 - -0.2 5,027,262 - -0.3 5,027,303 + +0.5 5,027,303 + +0.1 5,027,303 + -1.8 5,027,304 - -0.3 5,027,304 - -0.7 5,027,304 - +1.4 5,027,304 - -0.4 5,027,304 - -0.2 5,027,372 + Xcc-8004.5288.1 0.10 +0.3 5,027,372 + Xcc-8004.5288.1 0.10 -0.3 5,027,372 + Xcc-8004.5288.1 0.10 +0.7 5,027,373 - Xcc-8004.5288.1 0.10 -0.6 5,027,373 - Xcc-8004.5288.1 0.10 -0.5 5,027,373 - Xcc-8004.5288.1 0.10 -1.0 5,027,373 - Xcc-8004.5288.1 0.10 +2.0 5,027,373 - Xcc-8004.5288.1 0.10 +0.4 5,027,764 + Xcc-8004.5288.1 0.31 +0.5 5,027,764 + Xcc-8004.5288.1 0.31 +0.3 5,027,764 + Xcc-8004.5288.1 0.31 +0.4 5,027,764 + Xcc-8004.5288.1 0.31 +0.5 5,027,765 - Xcc-8004.5288.1 0.31 +0.1 5,027,765 - Xcc-8004.5288.1 0.31 -1.3
Or see this region's nucleotide sequence