Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5218.1

Experiment: R2A with Vogels_fungal_media 0.8X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5217.1 and Xcc-8004.5218.1 are separated by 5 nucleotidesXcc-8004.5218.1 and Xcc-8004.5220.1 overlap by 4 nucleotides Xcc-8004.5217.1: Xcc-8004.5217.1 - Starvation sensing protein RspA, at 4,953,809 to 4,955,068 Xcc-8004.5217.1 Xcc-8004.5218.1: Xcc-8004.5218.1 - Beta-xylosidase (EC 3.2.1.37), at 4,955,074 to 4,956,771 Xcc-8004.5218.1 Xcc-8004.5220.1: Xcc-8004.5220.1 - Glucan 1,4-beta-glucosidase, at 4,956,768 to 4,959,464 Xcc-8004.5220.1 Position (kb) 4955 4956 4957Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4954.083 kb on - strand, within Xcc-8004.5217.1at 4954.125 kb on + strand, within Xcc-8004.5217.1at 4954.125 kb on + strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.176 kb on - strand, within Xcc-8004.5217.1at 4954.176 kb on - strand, within Xcc-8004.5217.1at 4954.176 kb on - strand, within Xcc-8004.5217.1at 4954.288 kb on + strand, within Xcc-8004.5217.1at 4954.334 kb on + strand, within Xcc-8004.5217.1at 4954.334 kb on + strand, within Xcc-8004.5217.1at 4954.475 kb on + strand, within Xcc-8004.5217.1at 4954.700 kb on + strand, within Xcc-8004.5217.1at 4954.701 kb on - strand, within Xcc-8004.5217.1at 4954.877 kb on + strand, within Xcc-8004.5217.1at 4954.877 kb on + strand, within Xcc-8004.5217.1at 4954.877 kb on + strand, within Xcc-8004.5217.1at 4954.877 kb on + strand, within Xcc-8004.5217.1at 4954.877 kb on + strand, within Xcc-8004.5217.1at 4954.878 kb on - strand, within Xcc-8004.5217.1at 4954.878 kb on - strand, within Xcc-8004.5217.1at 4954.878 kb on - strand, within Xcc-8004.5217.1at 4954.878 kb on - strand, within Xcc-8004.5217.1at 4954.878 kb on - strand, within Xcc-8004.5217.1at 4954.922 kb on + strand, within Xcc-8004.5217.1at 4954.922 kb on + strand, within Xcc-8004.5217.1at 4954.923 kb on - strand, within Xcc-8004.5217.1at 4955.003 kb on + strandat 4955.009 kb on + strandat 4955.009 kb on + strandat 4955.010 kb on - strandat 4955.010 kb on - strandat 4955.010 kb on - strandat 4955.084 kb on + strandat 4955.085 kb on - strandat 4955.085 kb on - strandat 4955.096 kb on + strandat 4955.128 kb on + strandat 4955.129 kb on - strandat 4955.179 kb on + strandat 4955.290 kb on + strand, within Xcc-8004.5218.1at 4955.290 kb on + strand, within Xcc-8004.5218.1at 4955.291 kb on - strand, within Xcc-8004.5218.1at 4955.293 kb on + strand, within Xcc-8004.5218.1at 4955.294 kb on - strand, within Xcc-8004.5218.1at 4955.294 kb on - strand, within Xcc-8004.5218.1at 4955.294 kb on - strand, within Xcc-8004.5218.1at 4955.294 kb on - strand, within Xcc-8004.5218.1at 4955.294 kb on - strand, within Xcc-8004.5218.1at 4955.317 kb on + strand, within Xcc-8004.5218.1at 4955.407 kb on + strand, within Xcc-8004.5218.1at 4955.408 kb on - strand, within Xcc-8004.5218.1at 4955.408 kb on - strand, within Xcc-8004.5218.1at 4955.473 kb on + strand, within Xcc-8004.5218.1at 4955.473 kb on + strand, within Xcc-8004.5218.1at 4955.473 kb on + strand, within Xcc-8004.5218.1at 4955.473 kb on + strand, within Xcc-8004.5218.1at 4955.473 kb on + strand, within Xcc-8004.5218.1at 4955.474 kb on - strand, within Xcc-8004.5218.1at 4955.474 kb on - strand, within Xcc-8004.5218.1at 4955.474 kb on - strand, within Xcc-8004.5218.1at 4955.474 kb on - strand, within Xcc-8004.5218.1at 4955.474 kb on - strand, within Xcc-8004.5218.1at 4955.618 kb on - strand, within Xcc-8004.5218.1at 4955.618 kb on - strand, within Xcc-8004.5218.1at 4955.618 kb on - strand, within Xcc-8004.5218.1at 4955.656 kb on + strand, within Xcc-8004.5218.1at 4955.656 kb on + strand, within Xcc-8004.5218.1at 4955.656 kb on + strand, within Xcc-8004.5218.1at 4955.657 kb on - strand, within Xcc-8004.5218.1at 4955.791 kb on + strand, within Xcc-8004.5218.1at 4955.791 kb on + strand, within Xcc-8004.5218.1at 4955.792 kb on - strand, within Xcc-8004.5218.1at 4955.792 kb on - strand, within Xcc-8004.5218.1at 4955.792 kb on - strand, within Xcc-8004.5218.1at 4955.809 kb on + strand, within Xcc-8004.5218.1at 4955.809 kb on + strand, within Xcc-8004.5218.1at 4955.810 kb on - strand, within Xcc-8004.5218.1at 4955.810 kb on - strand, within Xcc-8004.5218.1at 4955.810 kb on - strand, within Xcc-8004.5218.1at 4955.810 kb on - strand, within Xcc-8004.5218.1at 4955.812 kb on + strand, within Xcc-8004.5218.1at 4955.812 kb on + strand, within Xcc-8004.5218.1at 4955.812 kb on + strand, within Xcc-8004.5218.1at 4955.812 kb on + strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.813 kb on - strand, within Xcc-8004.5218.1at 4955.869 kb on - strand, within Xcc-8004.5218.1at 4955.869 kb on - strand, within Xcc-8004.5218.1at 4956.050 kb on - strand, within Xcc-8004.5218.1at 4956.050 kb on - strand, within Xcc-8004.5218.1at 4956.137 kb on - strand, within Xcc-8004.5218.1at 4956.469 kb on + strand, within Xcc-8004.5218.1at 4956.469 kb on + strand, within Xcc-8004.5218.1at 4956.470 kb on - strand, within Xcc-8004.5218.1at 4956.470 kb on - strand, within Xcc-8004.5218.1at 4956.482 kb on + strand, within Xcc-8004.5218.1at 4956.482 kb on + strand, within Xcc-8004.5218.1at 4956.617 kb on - strandat 4956.891 kb on + strandat 4956.892 kb on - strandat 4957.017 kb on + strandat 4957.017 kb on + strandat 4957.276 kb on - strand, within Xcc-8004.5220.1at 4957.380 kb on + strand, within Xcc-8004.5220.1at 4957.381 kb on - strand, within Xcc-8004.5220.1at 4957.381 kb on - strand, within Xcc-8004.5220.1at 4957.450 kb on - strand, within Xcc-8004.5220.1at 4957.458 kb on + strand, within Xcc-8004.5220.1at 4957.458 kb on + strand, within Xcc-8004.5220.1at 4957.458 kb on + strand, within Xcc-8004.5220.1at 4957.458 kb on + strand, within Xcc-8004.5220.1at 4957.458 kb on + strand, within Xcc-8004.5220.1at 4957.458 kb on + strand, within Xcc-8004.5220.1at 4957.459 kb on - strand, within Xcc-8004.5220.1at 4957.459 kb on - strand, within Xcc-8004.5220.1at 4957.459 kb on - strand, within Xcc-8004.5220.1at 4957.459 kb on - strand, within Xcc-8004.5220.1at 4957.459 kb on - strand, within Xcc-8004.5220.1at 4957.459 kb on - strand, within Xcc-8004.5220.1at 4957.518 kb on + strand, within Xcc-8004.5220.1at 4957.518 kb on + strand, within Xcc-8004.5220.1at 4957.518 kb on + strand, within Xcc-8004.5220.1at 4957.518 kb on + strand, within Xcc-8004.5220.1at 4957.518 kb on + strand, within Xcc-8004.5220.1at 4957.518 kb on + strand, within Xcc-8004.5220.1at 4957.519 kb on - strand, within Xcc-8004.5220.1at 4957.519 kb on - strand, within Xcc-8004.5220.1at 4957.599 kb on + strand, within Xcc-8004.5220.1at 4957.599 kb on + strand, within Xcc-8004.5220.1at 4957.599 kb on + strand, within Xcc-8004.5220.1at 4957.599 kb on + strand, within Xcc-8004.5220.1at 4957.599 kb on + strand, within Xcc-8004.5220.1at 4957.599 kb on + strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.600 kb on - strand, within Xcc-8004.5220.1at 4957.722 kb on + strand, within Xcc-8004.5220.1at 4957.722 kb on + strand, within Xcc-8004.5220.1at 4957.722 kb on + strand, within Xcc-8004.5220.1at 4957.722 kb on + strand, within Xcc-8004.5220.1at 4957.722 kb on + strand, within Xcc-8004.5220.1at 4957.722 kb on + strand, within Xcc-8004.5220.1at 4957.722 kb on + strand, within Xcc-8004.5220.1at 4957.723 kb on - strand, within Xcc-8004.5220.1at 4957.723 kb on - strand, within Xcc-8004.5220.1at 4957.723 kb on - strand, within Xcc-8004.5220.1at 4957.723 kb on - strand, within Xcc-8004.5220.1at 4957.723 kb on - strand, within Xcc-8004.5220.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.8X
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4,954,083 - Xcc-8004.5217.1 0.22 -2.1
4,954,125 + Xcc-8004.5217.1 0.25 -0.8
4,954,125 + Xcc-8004.5217.1 0.25 +0.7
4,954,126 - Xcc-8004.5217.1 0.25 +0.6
4,954,126 - Xcc-8004.5217.1 0.25 -1.6
4,954,126 - Xcc-8004.5217.1 0.25 -0.2
4,954,126 - Xcc-8004.5217.1 0.25 -0.7
4,954,126 - Xcc-8004.5217.1 0.25 -0.6
4,954,176 - Xcc-8004.5217.1 0.29 -0.8
4,954,176 - Xcc-8004.5217.1 0.29 +0.4
4,954,176 - Xcc-8004.5217.1 0.29 -0.6
4,954,288 + Xcc-8004.5217.1 0.38 +0.2
4,954,334 + Xcc-8004.5217.1 0.42 -0.6
4,954,334 + Xcc-8004.5217.1 0.42 -0.7
4,954,475 + Xcc-8004.5217.1 0.53 -1.4
4,954,700 + Xcc-8004.5217.1 0.71 +0.1
4,954,701 - Xcc-8004.5217.1 0.71 -1.0
4,954,877 + Xcc-8004.5217.1 0.85 +0.9
4,954,877 + Xcc-8004.5217.1 0.85 -0.8
4,954,877 + Xcc-8004.5217.1 0.85 -0.1
4,954,877 + Xcc-8004.5217.1 0.85 -0.3
4,954,877 + Xcc-8004.5217.1 0.85 -0.2
4,954,878 - Xcc-8004.5217.1 0.85 +0.3
4,954,878 - Xcc-8004.5217.1 0.85 +1.7
4,954,878 - Xcc-8004.5217.1 0.85 -0.2
4,954,878 - Xcc-8004.5217.1 0.85 +0.9
4,954,878 - Xcc-8004.5217.1 0.85 -2.2
4,954,922 + Xcc-8004.5217.1 0.88 -0.3
4,954,922 + Xcc-8004.5217.1 0.88 +1.6
4,954,923 - Xcc-8004.5217.1 0.88 +0.0
4,955,003 + +0.7
4,955,009 + +0.5
4,955,009 + -0.8
4,955,010 - -2.1
4,955,010 - +0.0
4,955,010 - -0.5
4,955,084 + -2.0
4,955,085 - -0.5
4,955,085 - -0.2
4,955,096 + +0.2
4,955,128 + +1.1
4,955,129 - -0.0
4,955,179 + -0.2
4,955,290 + Xcc-8004.5218.1 0.13 -0.5
4,955,290 + Xcc-8004.5218.1 0.13 +1.1
4,955,291 - Xcc-8004.5218.1 0.13 -0.3
4,955,293 + Xcc-8004.5218.1 0.13 -0.1
4,955,294 - Xcc-8004.5218.1 0.13 -1.0
4,955,294 - Xcc-8004.5218.1 0.13 -0.0
4,955,294 - Xcc-8004.5218.1 0.13 -0.1
4,955,294 - Xcc-8004.5218.1 0.13 +0.0
4,955,294 - Xcc-8004.5218.1 0.13 +0.2
4,955,317 + Xcc-8004.5218.1 0.14 -1.1
4,955,407 + Xcc-8004.5218.1 0.20 -1.5
4,955,408 - Xcc-8004.5218.1 0.20 -0.3
4,955,408 - Xcc-8004.5218.1 0.20 -0.6
4,955,473 + Xcc-8004.5218.1 0.23 -0.2
4,955,473 + Xcc-8004.5218.1 0.23 -1.4
4,955,473 + Xcc-8004.5218.1 0.23 +2.3
4,955,473 + Xcc-8004.5218.1 0.23 -0.3
4,955,473 + Xcc-8004.5218.1 0.23 +0.2
4,955,474 - Xcc-8004.5218.1 0.24 -1.4
4,955,474 - Xcc-8004.5218.1 0.24 -0.2
4,955,474 - Xcc-8004.5218.1 0.24 +0.8
4,955,474 - Xcc-8004.5218.1 0.24 -1.4
4,955,474 - Xcc-8004.5218.1 0.24 -1.3
4,955,618 - Xcc-8004.5218.1 0.32 -0.6
4,955,618 - Xcc-8004.5218.1 0.32 +0.1
4,955,618 - Xcc-8004.5218.1 0.32 +1.3
4,955,656 + Xcc-8004.5218.1 0.34 -0.5
4,955,656 + Xcc-8004.5218.1 0.34 -0.9
4,955,656 + Xcc-8004.5218.1 0.34 +1.0
4,955,657 - Xcc-8004.5218.1 0.34 -0.3
4,955,791 + Xcc-8004.5218.1 0.42 +2.7
4,955,791 + Xcc-8004.5218.1 0.42 -1.7
4,955,792 - Xcc-8004.5218.1 0.42 +0.7
4,955,792 - Xcc-8004.5218.1 0.42 -0.6
4,955,792 - Xcc-8004.5218.1 0.42 +0.2
4,955,809 + Xcc-8004.5218.1 0.43 +0.3
4,955,809 + Xcc-8004.5218.1 0.43 -0.7
4,955,810 - Xcc-8004.5218.1 0.43 +0.1
4,955,810 - Xcc-8004.5218.1 0.43 -0.4
4,955,810 - Xcc-8004.5218.1 0.43 +0.4
4,955,810 - Xcc-8004.5218.1 0.43 -0.6
4,955,812 + Xcc-8004.5218.1 0.43 -0.9
4,955,812 + Xcc-8004.5218.1 0.43 -0.3
4,955,812 + Xcc-8004.5218.1 0.43 +0.1
4,955,812 + Xcc-8004.5218.1 0.43 -1.6
4,955,813 - Xcc-8004.5218.1 0.44 +0.3
4,955,813 - Xcc-8004.5218.1 0.44 +0.1
4,955,813 - Xcc-8004.5218.1 0.44 +0.2
4,955,813 - Xcc-8004.5218.1 0.44 +0.2
4,955,813 - Xcc-8004.5218.1 0.44 -2.6
4,955,813 - Xcc-8004.5218.1 0.44 -3.0
4,955,813 - Xcc-8004.5218.1 0.44 -1.8
4,955,813 - Xcc-8004.5218.1 0.44 +0.0
4,955,869 - Xcc-8004.5218.1 0.47 -0.9
4,955,869 - Xcc-8004.5218.1 0.47 -0.7
4,956,050 - Xcc-8004.5218.1 0.57 -2.2
4,956,050 - Xcc-8004.5218.1 0.57 -0.6
4,956,137 - Xcc-8004.5218.1 0.63 -0.6
4,956,469 + Xcc-8004.5218.1 0.82 -1.3
4,956,469 + Xcc-8004.5218.1 0.82 -0.4
4,956,470 - Xcc-8004.5218.1 0.82 -0.7
4,956,470 - Xcc-8004.5218.1 0.82 +0.0
4,956,482 + Xcc-8004.5218.1 0.83 -0.3
4,956,482 + Xcc-8004.5218.1 0.83 -1.3
4,956,617 - -0.1
4,956,891 + -0.1
4,956,892 - +0.2
4,957,017 + -1.5
4,957,017 + +1.7
4,957,276 - Xcc-8004.5220.1 0.19 -0.5
4,957,380 + Xcc-8004.5220.1 0.23 -0.2
4,957,381 - Xcc-8004.5220.1 0.23 -1.0
4,957,381 - Xcc-8004.5220.1 0.23 +0.9
4,957,450 - Xcc-8004.5220.1 0.25 +0.7
4,957,458 + Xcc-8004.5220.1 0.26 +1.1
4,957,458 + Xcc-8004.5220.1 0.26 +0.7
4,957,458 + Xcc-8004.5220.1 0.26 +0.2
4,957,458 + Xcc-8004.5220.1 0.26 +0.4
4,957,458 + Xcc-8004.5220.1 0.26 +1.2
4,957,458 + Xcc-8004.5220.1 0.26 +0.3
4,957,459 - Xcc-8004.5220.1 0.26 -1.6
4,957,459 - Xcc-8004.5220.1 0.26 +0.4
4,957,459 - Xcc-8004.5220.1 0.26 +0.7
4,957,459 - Xcc-8004.5220.1 0.26 +0.1
4,957,459 - Xcc-8004.5220.1 0.26 +0.2
4,957,459 - Xcc-8004.5220.1 0.26 -0.1
4,957,518 + Xcc-8004.5220.1 0.28 +0.9
4,957,518 + Xcc-8004.5220.1 0.28 -1.8
4,957,518 + Xcc-8004.5220.1 0.28 +0.2
4,957,518 + Xcc-8004.5220.1 0.28 +0.6
4,957,518 + Xcc-8004.5220.1 0.28 -0.2
4,957,518 + Xcc-8004.5220.1 0.28 -2.2
4,957,519 - Xcc-8004.5220.1 0.28 -0.2
4,957,519 - Xcc-8004.5220.1 0.28 -0.6
4,957,599 + Xcc-8004.5220.1 0.31 +1.7
4,957,599 + Xcc-8004.5220.1 0.31 -0.5
4,957,599 + Xcc-8004.5220.1 0.31 -0.0
4,957,599 + Xcc-8004.5220.1 0.31 -0.9
4,957,599 + Xcc-8004.5220.1 0.31 +0.1
4,957,599 + Xcc-8004.5220.1 0.31 -0.3
4,957,600 - Xcc-8004.5220.1 0.31 +0.2
4,957,600 - Xcc-8004.5220.1 0.31 -1.7
4,957,600 - Xcc-8004.5220.1 0.31 +0.0
4,957,600 - Xcc-8004.5220.1 0.31 -1.0
4,957,600 - Xcc-8004.5220.1 0.31 -0.2
4,957,600 - Xcc-8004.5220.1 0.31 -0.8
4,957,600 - Xcc-8004.5220.1 0.31 -0.6
4,957,600 - Xcc-8004.5220.1 0.31 +1.7
4,957,722 + Xcc-8004.5220.1 0.35 +0.7
4,957,722 + Xcc-8004.5220.1 0.35 +0.9
4,957,722 + Xcc-8004.5220.1 0.35 -0.4
4,957,722 + Xcc-8004.5220.1 0.35 -0.6
4,957,722 + Xcc-8004.5220.1 0.35 -0.2
4,957,722 + Xcc-8004.5220.1 0.35 +0.6
4,957,722 + Xcc-8004.5220.1 0.35 -0.4
4,957,723 - Xcc-8004.5220.1 0.35 -0.1
4,957,723 - Xcc-8004.5220.1 0.35 +0.6
4,957,723 - Xcc-8004.5220.1 0.35 -1.0
4,957,723 - Xcc-8004.5220.1 0.35 -0.6
4,957,723 - Xcc-8004.5220.1 0.35 +0.3

Or see this region's nucleotide sequence