Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2984.1

Experiment: R2A with Vogels_fungal_media 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vogels_fungal_media 0.8X
2,923,254	+				-0.1
2,923,255	-				-0.9
2,923,312	+				+0.2
2,923,312	+				+0.4
2,923,312	+				-1.3
2,923,369	+		Xcc-8004.2983.1	0.15	+0.5
2,923,369	+		Xcc-8004.2983.1	0.15	+0.1
2,923,369	+		Xcc-8004.2983.1	0.15	-0.1
2,923,369	+		Xcc-8004.2983.1	0.15	-0.5
2,923,415	+		Xcc-8004.2983.1	0.19	-1.1
2,923,415	+		Xcc-8004.2983.1	0.19	-0.5
2,923,424	+		Xcc-8004.2983.1	0.20	+0.1
2,923,503	+		Xcc-8004.2983.1	0.28	+0.1
2,923,512	+		Xcc-8004.2983.1	0.29	+0.1
2,923,512	+		Xcc-8004.2983.1	0.29	-0.1
2,923,554	+		Xcc-8004.2983.1	0.33	+0.6
2,923,554	+		Xcc-8004.2983.1	0.33	-0.2
2,923,555	-		Xcc-8004.2983.1	0.34	-0.1
2,923,555	-		Xcc-8004.2983.1	0.34	+1.0
2,923,638	+		Xcc-8004.2983.1	0.42	-0.3
2,923,638	+		Xcc-8004.2983.1	0.42	+1.4
2,923,638	+		Xcc-8004.2983.1	0.42	-0.1
2,923,638	+		Xcc-8004.2983.1	0.42	-0.4
2,923,663	-		Xcc-8004.2983.1	0.44	+1.0
2,923,663	-		Xcc-8004.2983.1	0.44	-0.7
2,923,663	-		Xcc-8004.2983.1	0.44	-0.2
2,923,697	-		Xcc-8004.2983.1	0.48	+0.8
2,923,714	+		Xcc-8004.2983.1	0.50	+0.9
2,923,714	+		Xcc-8004.2983.1	0.50	-0.6
2,923,714	+		Xcc-8004.2983.1	0.50	-1.7
2,923,714	+		Xcc-8004.2983.1	0.50	+0.3
2,923,714	+		Xcc-8004.2983.1	0.50	+0.5
2,923,715	-		Xcc-8004.2983.1	0.50	+0.4
2,923,715	-		Xcc-8004.2983.1	0.50	+0.8
2,923,715	-		Xcc-8004.2983.1	0.50	+0.5
2,923,715	-		Xcc-8004.2983.1	0.50	+0.1
2,923,715	-		Xcc-8004.2983.1	0.50	+0.0
2,923,736	+		Xcc-8004.2983.1	0.52	+0.5
2,923,778	+		Xcc-8004.2983.1	0.56	+0.5
2,923,778	+		Xcc-8004.2983.1	0.56	+0.7
2,923,778	+		Xcc-8004.2983.1	0.56	+0.6
2,923,779	-		Xcc-8004.2983.1	0.56	-1.2
2,923,807	+		Xcc-8004.2983.1	0.59	+1.1
2,923,807	+		Xcc-8004.2983.1	0.59	-0.3
2,923,807	+		Xcc-8004.2983.1	0.59	-0.0
2,923,807	+		Xcc-8004.2983.1	0.59	-0.4
2,923,807	+		Xcc-8004.2983.1	0.59	+0.9
2,923,808	-		Xcc-8004.2983.1	0.59	+0.3
2,923,808	-		Xcc-8004.2983.1	0.59	+0.5
2,923,813	+		Xcc-8004.2983.1	0.60	+0.3
2,923,871	-		Xcc-8004.2983.1	0.65	+0.5
2,923,871	-		Xcc-8004.2983.1	0.65	-1.4
2,923,871	-		Xcc-8004.2983.1	0.65	+0.2
2,923,921	-		Xcc-8004.2983.1	0.71	-0.6
2,924,005	+		Xcc-8004.2983.1	0.79	-0.7
2,924,005	+		Xcc-8004.2983.1	0.79	-0.2
2,924,005	+		Xcc-8004.2983.1	0.79	+1.3
2,924,005	+		Xcc-8004.2983.1	0.79	+0.4
2,924,005	+		Xcc-8004.2983.1	0.79	+0.5
2,924,006	-		Xcc-8004.2983.1	0.79	-0.8
2,924,006	-		Xcc-8004.2983.1	0.79	+0.9
2,924,006	-		Xcc-8004.2983.1	0.79	+0.6
2,924,006	-		Xcc-8004.2983.1	0.79	-0.5
2,924,006	-		Xcc-8004.2983.1	0.79	-0.0
2,924,006	-		Xcc-8004.2983.1	0.79	+0.3
2,924,053	+		Xcc-8004.2983.1	0.84	-0.7
2,924,053	+		Xcc-8004.2983.1	0.84	+0.7
2,924,053	+		Xcc-8004.2983.1	0.84	+0.5
2,924,053	+		Xcc-8004.2983.1	0.84	-0.3
2,924,053	+		Xcc-8004.2983.1	0.84	+0.7
2,924,054	-		Xcc-8004.2983.1	0.84	+0.3
2,924,054	-		Xcc-8004.2983.1	0.84	-0.0
2,924,054	-		Xcc-8004.2983.1	0.84	+0.1
2,924,054	-		Xcc-8004.2983.1	0.84	-0.7
2,924,060	-		Xcc-8004.2983.1	0.85	+1.7
2,924,097	-		Xcc-8004.2983.1	0.88	+0.7
2,924,123	+				+0.5
2,924,188	+				+1.1
2,924,189	-				-0.3
2,924,189	-				-0.0
2,924,189	-				-0.5
2,924,203	+				+1.0
2,924,203	+				+1.2
2,924,203	+				-0.9
2,924,203	+				+1.1
2,924,204	-				+1.1
2,924,204	-				+0.3
2,924,227	+				-0.1
2,924,227	+				+0.3
2,924,227	+				+0.8
2,924,227	+				-0.0
2,924,227	+				+1.3
2,924,228	-				-0.0
2,924,270	+				+0.3
2,924,270	+				+0.1
2,924,270	+				-0.3
2,924,270	+				+1.6
2,924,270	+				+0.5
2,924,270	+				+0.5
2,924,270	+				+1.2
2,924,271	-				-0.2
2,924,271	-				-0.4
2,924,271	-				-0.9
2,924,271	-				+0.1
2,924,271	-				-0.3
2,924,271	-				-0.3
2,924,283	-				+0.5
2,924,283	-				-0.7
2,924,286	-				-0.9
2,924,286	-				+0.0
2,924,327	+				-1.3
2,924,327	+				+0.6
2,924,327	+				+0.3
2,924,408	+		Xcc-8004.2984.1	0.12	+0.3
2,924,408	+		Xcc-8004.2984.1	0.12	+0.2
2,924,408	+		Xcc-8004.2984.1	0.12	+0.7
2,924,409	-		Xcc-8004.2984.1	0.12	+0.6
2,924,469	-		Xcc-8004.2984.1	0.15	-0.1
2,924,469	-		Xcc-8004.2984.1	0.15	+0.3
2,924,486	+		Xcc-8004.2984.1	0.16	-0.5
2,924,519	+		Xcc-8004.2984.1	0.18	+0.9
2,924,519	+		Xcc-8004.2984.1	0.18	+0.1
2,924,519	+		Xcc-8004.2984.1	0.18	+0.7
2,924,573	+		Xcc-8004.2984.1	0.21	-1.3
2,924,574	-		Xcc-8004.2984.1	0.21	-2.1
2,924,628	-		Xcc-8004.2984.1	0.25	-0.3
2,924,640	-		Xcc-8004.2984.1	0.25	+0.9
2,924,640	-		Xcc-8004.2984.1	0.25	-0.3
2,924,640	-		Xcc-8004.2984.1	0.25	+0.3
2,924,640	-		Xcc-8004.2984.1	0.25	+0.5
2,924,640	-		Xcc-8004.2984.1	0.25	+0.7
2,924,640	-		Xcc-8004.2984.1	0.25	+0.4
2,924,640	-		Xcc-8004.2984.1	0.25	+1.8
2,924,640	-		Xcc-8004.2984.1	0.25	+0.6
2,924,640	-		Xcc-8004.2984.1	0.25	-0.1
2,924,640	-		Xcc-8004.2984.1	0.25	-0.9
2,924,640	-		Xcc-8004.2984.1	0.25	+0.3
2,924,640	-		Xcc-8004.2984.1	0.25	-2.1
2,924,829	-		Xcc-8004.2984.1	0.37	+0.7
2,924,829	-		Xcc-8004.2984.1	0.37	-0.3
2,924,829	-		Xcc-8004.2984.1	0.37	+1.2
2,924,829	-		Xcc-8004.2984.1	0.37	+0.3
2,924,829	-		Xcc-8004.2984.1	0.37	-0.1
2,925,038	+		Xcc-8004.2984.1	0.49	-0.1
2,925,038	+		Xcc-8004.2984.1	0.49	+0.4
2,925,039	-		Xcc-8004.2984.1	0.49	+1.1
2,925,077	+		Xcc-8004.2984.1	0.51	+1.0
2,925,077	+		Xcc-8004.2984.1	0.51	+0.2
2,925,078	-		Xcc-8004.2984.1	0.51	-1.5
2,925,078	-		Xcc-8004.2984.1	0.51	+0.9
2,925,147	+		Xcc-8004.2984.1	0.55	-0.7
2,925,148	-		Xcc-8004.2984.1	0.55	-0.5
2,925,158	+		Xcc-8004.2984.1	0.56	+0.7
2,925,158	+		Xcc-8004.2984.1	0.56	+0.5
2,925,158	+		Xcc-8004.2984.1	0.56	+0.3
2,925,159	-		Xcc-8004.2984.1	0.56	-0.2
2,925,159	-		Xcc-8004.2984.1	0.56	+0.1
2,925,159	-		Xcc-8004.2984.1	0.56	-0.7
2,925,159	-		Xcc-8004.2984.1	0.56	+0.9
2,925,159	-		Xcc-8004.2984.1	0.56	-0.4
2,925,159	-		Xcc-8004.2984.1	0.56	+0.9
2,925,165	+		Xcc-8004.2984.1	0.56	-0.2
2,925,166	-		Xcc-8004.2984.1	0.56	+1.0
2,925,166	-		Xcc-8004.2984.1	0.56	+0.8
2,925,231	-		Xcc-8004.2984.1	0.60	-1.1
2,925,290	+		Xcc-8004.2984.1	0.64	+0.5
2,925,290	+		Xcc-8004.2984.1	0.64	-1.5
2,925,290	+		Xcc-8004.2984.1	0.64	+0.7
2,925,290	+		Xcc-8004.2984.1	0.64	-1.5
2,925,290	+		Xcc-8004.2984.1	0.64	+0.4
2,925,290	+		Xcc-8004.2984.1	0.64	+0.2
2,925,290	+		Xcc-8004.2984.1	0.64	-1.0
2,925,290	+		Xcc-8004.2984.1	0.64	-0.1
2,925,291	-		Xcc-8004.2984.1	0.64	-0.6
2,925,291	-		Xcc-8004.2984.1	0.64	+0.5
2,925,291	-		Xcc-8004.2984.1	0.64	-0.7
2,925,291	-		Xcc-8004.2984.1	0.64	+1.0
2,925,291	-		Xcc-8004.2984.1	0.64	+0.4
2,925,291	-		Xcc-8004.2984.1	0.64	+1.3
2,925,291	-		Xcc-8004.2984.1	0.64	-0.9
2,925,435	-		Xcc-8004.2984.1	0.72	+0.3
2,925,435	-		Xcc-8004.2984.1	0.72	+0.6
2,925,732	-		Xcc-8004.2984.1	0.90	-0.6
2,925,732	-		Xcc-8004.2984.1	0.90	-2.1
2,925,732	-		Xcc-8004.2984.1	0.90	+0.4
2,925,767	+				+0.8
2,925,767	+				+0.8
2,925,767	+				+1.4
2,925,767	+				+0.3
2,925,767	+				-0.3
2,925,768	-				-1.0
2,925,768	-				-1.3
2,925,768	-				+0.2
2,925,768	-				+1.5
2,925,768	-				+0.6
2,925,768	-				+0.4
2,925,776	+				-0.1
2,925,776	+				+0.2
2,925,776	+				+0.1
2,925,776	+				-1.1
2,925,776	+				+0.8
2,925,776	+				+0.3
2,925,777	-				+0.1
2,925,777	-				+0.3
2,925,777	-				+0.2
2,925,777	-				+1.2
2,925,777	-				-0.0
2,925,777	-				-0.4
2,925,839	+				+0.1
2,925,839	+				-0.2
2,925,839	+				+0.7
2,925,839	+				+0.0
2,925,839	+				+0.6
2,925,839	+				-0.2
2,925,840	-				+1.0
2,925,969	+				-0.7
2,925,970	-				-0.0
2,925,970	-				+0.5
2,925,970	-				+0.7
2,925,970	-				-0.5
2,925,970	-				+1.4
2,926,018	-				+0.6
2,926,018	-				+0.6
2,926,018	-				-0.0
2,926,070	+		Xcc-8004.2985.1	0.11	-1.0
2,926,070	+		Xcc-8004.2985.1	0.11	+0.3
2,926,071	-		Xcc-8004.2985.1	0.11	-0.3
2,926,071	-		Xcc-8004.2985.1	0.11	-0.3
2,926,157	+		Xcc-8004.2985.1	0.30	-0.4
2,926,157	+		Xcc-8004.2985.1	0.30	+0.6
2,926,157	+		Xcc-8004.2985.1	0.30	-0.3
2,926,157	+		Xcc-8004.2985.1	0.30	-0.5
2,926,158	-		Xcc-8004.2985.1	0.31	-0.0
2,926,158	-		Xcc-8004.2985.1	0.31	+1.3
2,926,158	-		Xcc-8004.2985.1	0.31	+1.4
2,926,158	-		Xcc-8004.2985.1	0.31	+0.0
2,926,158	-		Xcc-8004.2985.1	0.31	+1.6
2,926,171	+		Xcc-8004.2985.1	0.34	-0.5
2,926,171	+		Xcc-8004.2985.1	0.34	-0.7
2,926,172	-		Xcc-8004.2985.1	0.34	-0.1
2,926,172	-		Xcc-8004.2985.1	0.34	+0.3
2,926,461	+				-0.7
2,926,476	-				+0.1
2,926,476	-				-0.9
2,926,527	+				+0.1
2,926,527	+				-0.3
2,926,527	+				-0.9
2,926,527	+				+1.4
2,926,527	+				+0.3
2,926,527	+				-0.2
2,926,527	+				+0.3
2,926,527	+				+0.7
2,926,527	+				+0.4
2,926,528	-				+0.6
2,926,528	-				-0.6
2,926,528	-				-0.4
2,926,528	-				+1.2
2,926,528	-				+0.8
2,926,546	+				+0.0
2,926,547	-				-0.6
2,926,547	-				-0.2
2,926,547	-				+0.5
2,926,592	+				+0.7
2,926,592	+				+1.1
2,926,592	+				+0.3
2,926,592	+				+0.7
2,926,592	+				+0.5
2,926,592	+				-1.2
2,926,593	-				+0.0
2,926,593	-				+0.4
2,926,593	-				+0.4
2,926,593	-				+0.8
2,926,659	+				+0.5
2,926,660	-				+0.9
2,926,667	+				-0.1
2,926,667	+				+0.1
2,926,667	+				-1.1
2,926,667	+				-0.1
2,926,700	-				-0.3
2,926,700	-				+0.1
2,926,713	+				-0.5
2,926,713	+				+0.3
2,926,713	+				+0.4
2,926,713	+				-1.0
2,926,713	+				-0.3
2,926,713	+				-0.1
2,926,713	+				-0.3
2,926,713	+				+1.9
2,926,713	+				-1.3
2,926,713	+				+0.4
2,926,713	+				+0.7
2,926,714	-				-0.5
2,926,714	-				+0.8
2,926,714	-				+0.6
2,926,714	-				-1.3
2,926,714	-				+1.2
2,926,714	-				-0.3
2,926,714	-				+0.3
2,926,714	-				+1.0
2,926,714	-				-0.7
2,926,714	-				+0.8
2,926,714	-				-1.3
2,926,714	-				+0.5
2,926,760	+		Xcc-8004.2986.1	0.15	-0.6
2,926,761	-		Xcc-8004.2986.1	0.15	-0.5
2,926,761	-		Xcc-8004.2986.1	0.15	-1.4
2,926,761	-		Xcc-8004.2986.1	0.15	+0.2
2,926,761	-		Xcc-8004.2986.1	0.15	+0.0
2,926,869	+		Xcc-8004.2986.1	0.50	+0.7
2,926,869	+		Xcc-8004.2986.1	0.50	+0.7
2,926,869	+		Xcc-8004.2986.1	0.50	-0.4
2,926,869	+		Xcc-8004.2986.1	0.50	+1.4
2,926,903	+		Xcc-8004.2986.1	0.61	+0.8
2,926,903	+		Xcc-8004.2986.1	0.61	-0.1
2,926,903	+		Xcc-8004.2986.1	0.61	-0.4
2,926,903	+		Xcc-8004.2986.1	0.61	-0.6
2,926,903	+		Xcc-8004.2986.1	0.61	+0.3
2,926,903	+		Xcc-8004.2986.1	0.61	-0.4
2,926,903	+		Xcc-8004.2986.1	0.61	-0.2
2,926,903	+		Xcc-8004.2986.1	0.61	+0.2
2,926,903	+		Xcc-8004.2986.1	0.61	+0.6
2,926,903	+		Xcc-8004.2986.1	0.61	+0.7
2,926,903	+		Xcc-8004.2986.1	0.61	+0.3
2,926,904	-		Xcc-8004.2986.1	0.61	+0.1
2,926,904	-		Xcc-8004.2986.1	0.61	-0.3
2,926,904	-		Xcc-8004.2986.1	0.61	+0.0
2,926,904	-		Xcc-8004.2986.1	0.61	+0.8
2,926,904	-		Xcc-8004.2986.1	0.61	+1.1
2,926,904	-		Xcc-8004.2986.1	0.61	+0.7
2,926,904	-		Xcc-8004.2986.1	0.61	+0.3
2,926,904	-		Xcc-8004.2986.1	0.61	+0.9
2,926,904	-		Xcc-8004.2986.1	0.61	-1.2
2,926,904	-		Xcc-8004.2986.1	0.61	-0.0
2,926,904	-		Xcc-8004.2986.1	0.61	+1.1
2,926,904	-		Xcc-8004.2986.1	0.61	+0.3
2,926,904	-		Xcc-8004.2986.1	0.61	-1.2
2,926,904	-		Xcc-8004.2986.1	0.61	+0.5
2,926,904	-		Xcc-8004.2986.1	0.61	-2.4