Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2894.1

Experiment: R2A with Vogels_fungal_media 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vogels_fungal_media 0.8X
2,813,540	-				-1.8
2,813,540	-				-2.1
2,813,540	-				+0.3
2,813,540	-				-1.0
2,813,540	-				-0.4
2,813,540	-				-1.4
2,813,540	-				-0.4
2,813,551	-				-0.9
2,813,551	-				-0.7
2,813,613	+		Xcc-8004.2892.1	0.11	-1.6
2,813,614	-		Xcc-8004.2892.1	0.11	+0.3
2,813,614	-		Xcc-8004.2892.1	0.11	-0.1
2,813,614	-		Xcc-8004.2892.1	0.11	+0.2
2,813,614	-		Xcc-8004.2892.1	0.11	-0.1
2,814,264	+				-0.7
2,814,268	+				+0.2
2,814,268	+				-0.3
2,814,268	+				-0.6
2,814,283	-				+0.3
2,814,296	+				-0.6
2,814,296	+				-1.7
2,814,319	+				+0.2
2,814,319	+				+1.7
2,814,319	+				-1.8
2,814,319	+				+0.2
2,814,319	+				-0.6
2,814,319	+				-0.4
2,814,319	+				+0.0
2,814,320	-				-2.5
2,814,320	-				-1.0
2,814,320	-				+0.3
2,814,320	-				-0.3
2,814,320	-				+0.6
2,814,320	-				+0.8
2,814,320	-				-2.0
2,814,320	-				-0.0
2,814,320	-				-0.1
2,814,352	+				-0.2
2,814,368	+				-0.5
2,814,368	+				-0.7
2,814,368	+				+0.3
2,814,368	+				+0.0
2,814,369	-				-1.4
2,814,369	-				+0.1
2,814,412	-				+0.2
2,814,431	+				+0.3
2,814,431	+				-0.7
2,814,431	+				+1.6
2,814,432	-				-1.0
2,814,437	+				+0.4
2,814,437	+				-0.9
2,814,437	+				+1.1
2,814,437	+				-0.2
2,814,438	-				+0.6
2,814,438	-				-0.0
2,814,438	-				-0.4
2,814,438	-				+0.3
2,814,438	-				+0.5
2,814,438	-				-0.6
2,814,440	+				+0.6
2,814,440	+				-0.0
2,814,440	+				-0.2
2,814,440	+				+0.2
2,814,440	+				-0.1
2,814,440	+				+0.9
2,814,440	+				-1.7
2,814,440	+				-0.6
2,814,441	-				-0.9
2,814,441	-				-0.8
2,814,441	-				-0.0
2,814,441	-				+0.0
2,814,441	-				+0.3
2,814,441	-				-0.5
2,814,441	-				-0.4
2,814,441	-				-0.7
2,814,441	-				-0.5
2,814,441	-				-2.1
2,814,488	+				+1.6
2,814,829	+		Xcc-8004.2894.1	0.16	+0.4
2,814,829	+		Xcc-8004.2894.1	0.16	-0.5
2,814,830	-		Xcc-8004.2894.1	0.16	-1.6
2,815,015	+		Xcc-8004.2894.1	0.23	-2.3
2,815,016	-		Xcc-8004.2894.1	0.23	+0.2
2,815,016	-		Xcc-8004.2894.1	0.23	+0.4
2,815,016	-		Xcc-8004.2894.1	0.23	-1.5
2,815,177	-		Xcc-8004.2894.1	0.29	+0.2
2,815,235	+		Xcc-8004.2894.1	0.31	-0.3
2,815,236	-		Xcc-8004.2894.1	0.31	+0.4
2,815,236	-		Xcc-8004.2894.1	0.31	-0.0
2,815,236	-		Xcc-8004.2894.1	0.31	-0.2
2,815,236	-		Xcc-8004.2894.1	0.31	+0.0
2,815,236	-		Xcc-8004.2894.1	0.31	+0.8
2,815,236	-		Xcc-8004.2894.1	0.31	-0.5
2,815,301	+		Xcc-8004.2894.1	0.33	-0.5
2,815,302	-		Xcc-8004.2894.1	0.33	-0.2
2,815,302	-		Xcc-8004.2894.1	0.33	+0.5
2,815,302	-		Xcc-8004.2894.1	0.33	-0.3
2,815,349	+		Xcc-8004.2894.1	0.35	+0.2
2,815,349	+		Xcc-8004.2894.1	0.35	+1.2
2,815,349	+		Xcc-8004.2894.1	0.35	+0.1
2,815,350	-		Xcc-8004.2894.1	0.35	+0.8
2,815,389	+		Xcc-8004.2894.1	0.36	-2.2
2,815,389	+		Xcc-8004.2894.1	0.36	-0.9
2,815,390	-		Xcc-8004.2894.1	0.36	-0.9
2,815,390	-		Xcc-8004.2894.1	0.36	+0.5
2,815,400	+		Xcc-8004.2894.1	0.37	-0.7
2,815,400	+		Xcc-8004.2894.1	0.37	-0.3
2,815,400	+		Xcc-8004.2894.1	0.37	-0.2
2,815,400	+		Xcc-8004.2894.1	0.37	-0.4
2,815,400	+		Xcc-8004.2894.1	0.37	-0.2
2,815,401	-		Xcc-8004.2894.1	0.37	-0.7
2,815,401	-		Xcc-8004.2894.1	0.37	+0.4
2,815,401	-		Xcc-8004.2894.1	0.37	-0.6
2,815,401	-		Xcc-8004.2894.1	0.37	-0.7
2,815,401	-		Xcc-8004.2894.1	0.37	+0.7
2,815,401	-		Xcc-8004.2894.1	0.37	-1.8
2,815,436	-		Xcc-8004.2894.1	0.38	-0.7
2,815,451	+		Xcc-8004.2894.1	0.39	-1.8
2,815,451	+		Xcc-8004.2894.1	0.39	-0.8
2,815,452	-		Xcc-8004.2894.1	0.39	-0.2
2,815,452	-		Xcc-8004.2894.1	0.39	-1.0
2,815,452	-		Xcc-8004.2894.1	0.39	-0.8
2,815,553	+		Xcc-8004.2894.1	0.42	-1.2
2,815,553	+		Xcc-8004.2894.1	0.42	-0.1
2,815,883	+		Xcc-8004.2894.1	0.54	-0.3
2,815,883	+		Xcc-8004.2894.1	0.54	-0.8
2,815,884	-		Xcc-8004.2894.1	0.54	-0.2
2,815,884	-		Xcc-8004.2894.1	0.54	-0.7
2,815,884	-		Xcc-8004.2894.1	0.54	-0.7
2,815,884	-		Xcc-8004.2894.1	0.54	-0.6
2,815,931	+		Xcc-8004.2894.1	0.56	-1.8
2,815,931	+		Xcc-8004.2894.1	0.56	-0.2
2,815,931	+		Xcc-8004.2894.1	0.56	+0.5
2,815,931	+		Xcc-8004.2894.1	0.56	+0.1
2,815,931	+		Xcc-8004.2894.1	0.56	+0.4
2,815,931	+		Xcc-8004.2894.1	0.56	-1.3
2,815,932	-		Xcc-8004.2894.1	0.56	+0.2
2,815,932	-		Xcc-8004.2894.1	0.56	+0.5
2,815,932	-		Xcc-8004.2894.1	0.56	+0.1
2,815,932	-		Xcc-8004.2894.1	0.56	-0.4
2,815,932	-		Xcc-8004.2894.1	0.56	-0.0
2,815,932	-		Xcc-8004.2894.1	0.56	-0.6
2,816,091	-		Xcc-8004.2894.1	0.62	+0.1
2,816,091	-		Xcc-8004.2894.1	0.62	-0.5
2,816,120	+		Xcc-8004.2894.1	0.63	-0.4
2,816,120	+		Xcc-8004.2894.1	0.63	-0.7
2,816,120	+		Xcc-8004.2894.1	0.63	-0.2
2,816,121	-		Xcc-8004.2894.1	0.63	-0.1
2,816,121	-		Xcc-8004.2894.1	0.63	+1.1
2,816,121	-		Xcc-8004.2894.1	0.63	-0.4
2,816,195	+		Xcc-8004.2894.1	0.66	-1.0
2,816,195	+		Xcc-8004.2894.1	0.66	+1.1
2,816,195	+		Xcc-8004.2894.1	0.66	-0.3
2,816,196	-		Xcc-8004.2894.1	0.66	-0.3
2,816,196	-		Xcc-8004.2894.1	0.66	+0.8
2,816,196	-		Xcc-8004.2894.1	0.66	-1.1
2,816,279	+		Xcc-8004.2894.1	0.69	+0.5
2,816,279	+		Xcc-8004.2894.1	0.69	-0.9
2,816,280	-		Xcc-8004.2894.1	0.69	+0.9
2,816,280	-		Xcc-8004.2894.1	0.69	-0.5
2,816,280	-		Xcc-8004.2894.1	0.69	-2.2
2,816,289	+		Xcc-8004.2894.1	0.69	-0.7
2,816,289	+		Xcc-8004.2894.1	0.69	-0.1
2,816,289	+		Xcc-8004.2894.1	0.69	-1.5
2,816,289	+		Xcc-8004.2894.1	0.69	-0.1
2,816,289	+		Xcc-8004.2894.1	0.69	-0.0
2,816,289	+		Xcc-8004.2894.1	0.69	-2.5
2,816,289	+		Xcc-8004.2894.1	0.69	-0.1
2,816,289	+		Xcc-8004.2894.1	0.69	-0.2
2,816,290	-		Xcc-8004.2894.1	0.69	-1.4
2,816,290	-		Xcc-8004.2894.1	0.69	-2.1
2,816,290	-		Xcc-8004.2894.1	0.69	+0.7
2,816,290	-		Xcc-8004.2894.1	0.69	-0.2
2,816,290	-		Xcc-8004.2894.1	0.69	-1.4
2,816,342	+		Xcc-8004.2894.1	0.71	-0.5
2,816,342	+		Xcc-8004.2894.1	0.71	+0.8
2,816,366	+		Xcc-8004.2894.1	0.72	+0.5
2,816,366	+		Xcc-8004.2894.1	0.72	+0.9
2,816,366	+		Xcc-8004.2894.1	0.72	+0.3
2,816,366	+		Xcc-8004.2894.1	0.72	-0.3
2,816,366	+		Xcc-8004.2894.1	0.72	-0.2
2,816,366	+		Xcc-8004.2894.1	0.72	+0.4
2,816,367	-		Xcc-8004.2894.1	0.72	-1.7
2,816,367	-		Xcc-8004.2894.1	0.72	+0.4
2,816,367	-		Xcc-8004.2894.1	0.72	-0.5
2,816,367	-		Xcc-8004.2894.1	0.72	-0.2
2,816,367	-		Xcc-8004.2894.1	0.72	+0.5
2,816,367	-		Xcc-8004.2894.1	0.72	-0.6
2,816,367	-		Xcc-8004.2894.1	0.72	+0.3
2,816,367	-		Xcc-8004.2894.1	0.72	-0.5
2,816,367	-		Xcc-8004.2894.1	0.72	-1.1
2,816,367	-		Xcc-8004.2894.1	0.72	-1.3
2,816,385	-		Xcc-8004.2894.1	0.72	+0.4
2,816,567	+		Xcc-8004.2894.1	0.79	+0.1
2,816,567	+		Xcc-8004.2894.1	0.79	-1.4
2,816,567	+		Xcc-8004.2894.1	0.79	+0.1
2,816,567	+		Xcc-8004.2894.1	0.79	+0.1
2,816,567	+		Xcc-8004.2894.1	0.79	-0.3
2,816,568	-		Xcc-8004.2894.1	0.79	-2.7
2,816,568	-		Xcc-8004.2894.1	0.79	+0.8
2,816,672	+		Xcc-8004.2894.1	0.83	-0.8
2,816,672	+		Xcc-8004.2894.1	0.83	+0.6
2,816,672	+		Xcc-8004.2894.1	0.83	-1.3
2,816,672	+		Xcc-8004.2894.1	0.83	-1.8
2,816,672	+		Xcc-8004.2894.1	0.83	+0.0
2,816,672	+		Xcc-8004.2894.1	0.83	+0.1
2,816,673	-		Xcc-8004.2894.1	0.83	-0.5
2,816,673	-		Xcc-8004.2894.1	0.83	-1.8
2,816,714	+		Xcc-8004.2894.1	0.84	-0.2
2,816,715	-		Xcc-8004.2894.1	0.84	+0.4
2,816,715	-		Xcc-8004.2894.1	0.84	+0.6
2,816,715	-		Xcc-8004.2894.1	0.84	-0.5
2,816,732	+		Xcc-8004.2894.1	0.85	+0.7
2,816,732	+		Xcc-8004.2894.1	0.85	-0.0
2,816,732	+		Xcc-8004.2894.1	0.85	+1.5
2,816,732	+		Xcc-8004.2894.1	0.85	-2.1
2,816,732	+		Xcc-8004.2894.1	0.85	-1.4
2,816,732	+		Xcc-8004.2894.1	0.85	-0.1
2,816,732	+		Xcc-8004.2894.1	0.85	-1.1
2,816,732	+		Xcc-8004.2894.1	0.85	+0.3
2,816,732	+		Xcc-8004.2894.1	0.85	+3.6
2,816,733	-		Xcc-8004.2894.1	0.85	-0.5
2,816,733	-		Xcc-8004.2894.1	0.85	-0.0
2,816,733	-		Xcc-8004.2894.1	0.85	-0.7
2,816,733	-		Xcc-8004.2894.1	0.85	-0.6
2,816,733	-		Xcc-8004.2894.1	0.85	-0.2
2,816,733	-		Xcc-8004.2894.1	0.85	+1.9
2,816,777	+		Xcc-8004.2894.1	0.87	-0.4
2,816,778	-		Xcc-8004.2894.1	0.87	-1.1
2,817,002	-				-0.1
2,817,002	-				-0.9
2,817,083	+				-0.3
2,817,083	+				-0.1
2,817,084	-				+0.4
2,817,084	-				-0.3
2,817,084	-				+0.0
2,817,084	-				+0.2
2,817,084	-				-0.2
2,817,110	+				-0.5
2,817,110	+				-0.6
2,817,110	+				-3.0
2,817,111	-				+0.2
2,817,111	-				-1.4
2,817,111	-				+0.1
2,817,111	-				+0.0
2,817,111	-				+0.2
2,817,126	+				-0.3
2,817,127	-				-0.8
2,817,127	-				+1.6
2,817,369	+				+0.2
2,817,369	+				-0.0
2,817,369	+				+0.6
2,817,369	+				-0.8
2,817,369	+				-0.3
2,817,369	+				+0.1
2,817,370	-				-0.6
2,817,417	+		Xcc-8004.2895.1	0.18	-2.8
2,817,417	+		Xcc-8004.2895.1	0.18	+0.3
2,817,417	+		Xcc-8004.2895.1	0.18	+0.7
2,817,417	+		Xcc-8004.2895.1	0.18	+0.7
2,817,418	-		Xcc-8004.2895.1	0.18	-0.2
2,817,418	-		Xcc-8004.2895.1	0.18	-1.0
2,817,491	-		Xcc-8004.2895.1	0.34	+1.2
2,817,641	+		Xcc-8004.2895.1	0.68	-0.7
2,817,641	+		Xcc-8004.2895.1	0.68	-0.4
2,817,641	+		Xcc-8004.2895.1	0.68	+0.1
2,817,641	+		Xcc-8004.2895.1	0.68	+0.0
2,817,642	-		Xcc-8004.2895.1	0.68	+1.4
2,817,642	-		Xcc-8004.2895.1	0.68	-0.9
2,817,642	-		Xcc-8004.2895.1	0.68	+0.0
2,817,749	+				+0.3
2,817,750	-				-0.9
2,817,750	-				+0.6
2,817,813	+				+0.7
2,817,813	+				-0.4
2,817,813	+				-1.4
2,817,813	+				-0.0
2,817,814	-				-0.5
2,817,814	-				-0.6
2,817,814	-				+0.3
2,817,814	-				+0.1
2,817,814	-				-0.3
2,817,814	-				+0.1
2,817,863	+				-0.7
2,818,034	+				+1.9
2,818,034	+				-0.8
2,818,034	+				+0.4
2,818,034	+				+1.0
2,818,034	+				+0.3
2,818,034	+				+1.1
2,818,034	+				-1.8
2,818,035	-				-0.8
2,818,035	-				-1.4
2,818,035	-				-1.0
2,818,039	-				-1.5
2,818,077	+		Xcc-8004.2896.1	0.12	-0.3
2,818,077	+		Xcc-8004.2896.1	0.12	+0.0
2,818,077	+		Xcc-8004.2896.1	0.12	-0.7
2,818,078	-		Xcc-8004.2896.1	0.12	-0.2
2,818,146	+		Xcc-8004.2896.1	0.16	+0.4
2,818,147	-		Xcc-8004.2896.1	0.16	+1.0