Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08960 and PGA1_c08970 are separated by 19 nucleotides PGA1_c08970 and PGA1_c08980 are separated by 205 nucleotides PGA1_c08980 and PGA1_c08990 are separated by 142 nucleotides PGA1_c08990 and PGA1_c09000 overlap by 2 nucleotides
PGA1_c08960: PGA1_c08960 - DNA repair endonuclease mmcB (DUF1052) <small>(from data)</small>, at 925,190 to 925,645
_c08960
PGA1_c08970: PGA1_c08970 - hypothetical protein, at 925,665 to 925,853
_c08970
PGA1_c08980: PGA1_c08980 - tRNA-His, at 926,059 to 926,135
_c08980
PGA1_c08990: PGA1_c08990 - hypothetical protein, at 926,278 to 926,592
_c08990
PGA1_c09000: PGA1_c09000 - ribosomal large subunit pseudouridine synthase D, at 926,591 to 927,625
_c09000
Position (kb) 926
927 Strain fitness (log2 ratio) -2
-1
0
1 at 925.321 kb on + strand, within PGA1_c08960 at 925.333 kb on + strand, within PGA1_c08960 at 925.338 kb on + strand, within PGA1_c08960 at 925.346 kb on - strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.348 kb on + strand, within PGA1_c08960 at 925.393 kb on + strand, within PGA1_c08960 at 925.397 kb on + strand, within PGA1_c08960 at 925.398 kb on + strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.401 kb on - strand, within PGA1_c08960 at 925.406 kb on - strand, within PGA1_c08960 at 925.433 kb on + strand, within PGA1_c08960 at 925.472 kb on + strand, within PGA1_c08960 at 925.625 kb on + strand at 925.632 kb on - strand at 925.633 kb on - strand at 925.699 kb on + strand, within PGA1_c08970 at 925.840 kb on + strand at 925.873 kb on - strand at 925.880 kb on - strand at 925.901 kb on + strand at 925.929 kb on + strand at 925.944 kb on + strand at 925.952 kb on - strand at 925.952 kb on - strand at 925.963 kb on - strand at 925.963 kb on - strand at 926.233 kb on + strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.243 kb on - strand at 926.293 kb on - strand at 926.293 kb on - strand at 926.340 kb on - strand, within PGA1_c08990 at 926.439 kb on + strand, within PGA1_c08990 at 926.484 kb on - strand, within PGA1_c08990 at 926.484 kb on - strand, within PGA1_c08990 at 926.596 kb on - strand at 926.692 kb on + strand at 926.971 kb on + strand, within PGA1_c09000 at 926.989 kb on + strand, within PGA1_c09000 at 927.011 kb on - strand, within PGA1_c09000 at 927.030 kb on + strand at 927.038 kb on - strand, within PGA1_c09000 at 927.068 kb on + strand, within PGA1_c09000 at 927.129 kb on + strand, within PGA1_c09000 at 927.137 kb on - strand, within PGA1_c09000 at 927.270 kb on - strand, within PGA1_c09000 at 927.270 kb on - strand, within PGA1_c09000 at 927.337 kb on + strand, within PGA1_c09000 at 927.366 kb on + strand, within PGA1_c09000 at 927.405 kb on + strand, within PGA1_c09000 at 927.406 kb on - strand, within PGA1_c09000 at 927.528 kb on + strand at 927.547 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 925,321 + PGA1_c08960 0.29 +1.4 925,333 + PGA1_c08960 0.31 -1.2 925,338 + PGA1_c08960 0.32 -0.0 925,346 - PGA1_c08960 0.34 +0.8 925,348 + PGA1_c08960 0.35 +0.1 925,348 + PGA1_c08960 0.35 -1.2 925,393 + PGA1_c08960 0.45 -0.3 925,397 + PGA1_c08960 0.45 -0.4 925,398 + PGA1_c08960 0.46 +0.5 925,401 - PGA1_c08960 0.46 +0.6 925,401 - PGA1_c08960 0.46 +0.5 925,406 - PGA1_c08960 0.47 -0.5 925,433 + PGA1_c08960 0.53 -1.5 925,472 + PGA1_c08960 0.62 -0.8 925,625 + +0.2 925,632 - +1.1 925,633 - -0.0 925,699 + PGA1_c08970 0.18 -0.5 925,840 + -0.8 925,873 - +0.1 925,880 - +0.4 925,901 + -0.6 925,929 + +0.1 925,944 + -0.5 925,952 - +0.6 925,952 - -0.8 925,963 - +0.7 925,963 - +0.0 926,233 + -1.8 926,243 - -2.2 926,243 - +0.0 926,243 - +0.4 926,243 - +0.7 926,243 - +0.2 926,243 - +1.2 926,243 - +0.6 926,293 - +0.0 926,293 - -0.0 926,340 - PGA1_c08990 0.20 -1.2 926,439 + PGA1_c08990 0.51 -0.9 926,484 - PGA1_c08990 0.65 +0.2 926,484 - PGA1_c08990 0.65 -0.3 926,596 - +0.1 926,692 + -1.4 926,971 + PGA1_c09000 0.37 -1.5 926,989 + PGA1_c09000 0.38 -1.5 927,011 - PGA1_c09000 0.41 +0.2 927,030 + +1.3 927,038 - PGA1_c09000 0.43 -1.9 927,068 + PGA1_c09000 0.46 -0.4 927,129 + PGA1_c09000 0.52 -1.9 927,137 - PGA1_c09000 0.53 -0.3 927,270 - PGA1_c09000 0.66 -1.5 927,270 - PGA1_c09000 0.66 +0.5 927,337 + PGA1_c09000 0.72 -2.3 927,366 + PGA1_c09000 0.75 -0.1 927,405 + PGA1_c09000 0.79 -0.6 927,406 - PGA1_c09000 0.79 -1.9 927,528 + +0.2 927,547 - -0.3
Or see this region's nucleotide sequence