Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08450

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08440 and PGA1_c08450 are separated by 109 nucleotidesPGA1_c08450 and PGA1_c08460 overlap by 8 nucleotidesPGA1_c08460 and PGA1_c08470 are separated by 17 nucleotides PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501 _c08440 PGA1_c08450: PGA1_c08450 - Predicted membrane protein (DUF2061)., at 874,611 to 874,817 _c08450 PGA1_c08460: PGA1_c08460 - putative fatty acid desaturase, at 874,810 to 875,754 _c08460 PGA1_c08470: PGA1_c08470 - putative integral membrane protein, at 875,772 to 876,674 _c08470 Position (kb) 874 875Strain fitness (log2 ratio) -1 0 1 2at 873.674 kb on + strandat 873.674 kb on + strandat 873.703 kb on - strandat 873.815 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.831 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.843 kb on + strand, within PGA1_c08440at 873.882 kb on + strand, within PGA1_c08440at 873.882 kb on + strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.900 kb on - strand, within PGA1_c08440at 873.958 kb on + strand, within PGA1_c08440at 873.958 kb on + strand, within PGA1_c08440at 873.966 kb on - strand, within PGA1_c08440at 874.057 kb on + strand, within PGA1_c08440at 874.078 kb on - strand, within PGA1_c08440at 874.297 kb on + strand, within PGA1_c08440at 874.398 kb on + strand, within PGA1_c08440at 874.430 kb on + strandat 874.445 kb on + strandat 874.451 kb on - strandat 874.453 kb on - strandat 874.453 kb on - strandat 874.472 kb on + strandat 874.570 kb on + strandat 874.570 kb on + strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.722 kb on + strand, within PGA1_c08450at 874.778 kb on + strand, within PGA1_c08450at 874.783 kb on + strand, within PGA1_c08450at 875.012 kb on + strand, within PGA1_c08460at 875.012 kb on + strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.156 kb on + strand, within PGA1_c08460at 875.156 kb on + strand, within PGA1_c08460at 875.162 kb on - strand, within PGA1_c08460at 875.162 kb on - strand, within PGA1_c08460at 875.214 kb on + strand, within PGA1_c08460at 875.214 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.273 kb on - strand, within PGA1_c08460at 875.278 kb on - strand, within PGA1_c08460at 875.278 kb on - strand, within PGA1_c08460at 875.281 kb on + strand, within PGA1_c08460at 875.283 kb on - strand, within PGA1_c08460at 875.299 kb on + strand, within PGA1_c08460at 875.420 kb on - strand, within PGA1_c08460at 875.438 kb on + strand, within PGA1_c08460at 875.526 kb on - strand, within PGA1_c08460at 875.616 kb on + strand, within PGA1_c08460at 875.619 kb on + strand, within PGA1_c08460at 875.635 kb on - strand, within PGA1_c08460at 875.635 kb on - strand, within PGA1_c08460at 875.663 kb on + strandat 875.686 kb on + strandat 875.694 kb on - strandat 875.696 kb on + strandat 875.696 kb on + strandat 875.696 kb on + strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.708 kb on + strandat 875.728 kb on - strandat 875.746 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml
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873,674 + +0.2
873,674 + +0.6
873,703 - -0.8
873,815 + PGA1_c08440 0.20 -0.5
873,828 + PGA1_c08440 0.22 -0.2
873,828 + PGA1_c08440 0.22 +0.6
873,828 + PGA1_c08440 0.22 +0.8
873,828 + PGA1_c08440 0.22 +0.2
873,828 + PGA1_c08440 0.22 -0.4
873,828 + PGA1_c08440 0.22 +0.2
873,828 + PGA1_c08440 0.22 +0.5
873,831 - PGA1_c08440 0.22 -0.6
873,836 - PGA1_c08440 0.23 +0.1
873,836 - PGA1_c08440 0.23 -0.1
873,836 - PGA1_c08440 0.23 +0.4
873,836 - PGA1_c08440 0.23 -0.1
873,836 - PGA1_c08440 0.23 +1.0
873,843 + PGA1_c08440 0.23 -0.8
873,882 + PGA1_c08440 0.28 +0.1
873,882 + PGA1_c08440 0.28 -0.2
873,890 - PGA1_c08440 0.29 -0.8
873,890 - PGA1_c08440 0.29 +0.3
873,890 - PGA1_c08440 0.29 -0.7
873,900 - PGA1_c08440 0.30 -0.8
873,958 + PGA1_c08440 0.37 -0.8
873,958 + PGA1_c08440 0.37 +0.9
873,966 - PGA1_c08440 0.38 -0.7
874,057 + PGA1_c08440 0.48 +0.3
874,078 - PGA1_c08440 0.51 +0.4
874,297 + PGA1_c08440 0.76 +0.1
874,398 + PGA1_c08440 0.88 +0.3
874,430 + -0.7
874,445 + -0.0
874,451 - -0.2
874,453 - +1.2
874,453 - +0.8
874,472 + -0.6
874,570 + -0.2
874,570 + +0.1
874,578 - +0.5
874,578 - +0.9
874,578 - +0.6
874,578 - +0.6
874,578 - -0.3
874,722 + PGA1_c08450 0.54 -1.0
874,778 + PGA1_c08450 0.81 -0.3
874,783 + PGA1_c08450 0.83 -0.2
875,012 + PGA1_c08460 0.21 +0.6
875,012 + PGA1_c08460 0.21 -1.5
875,020 - PGA1_c08460 0.22 -1.0
875,020 - PGA1_c08460 0.22 +0.3
875,020 - PGA1_c08460 0.22 +0.2
875,156 + PGA1_c08460 0.37 +0.1
875,156 + PGA1_c08460 0.37 +0.0
875,162 - PGA1_c08460 0.37 -0.4
875,162 - PGA1_c08460 0.37 -1.0
875,214 + PGA1_c08460 0.43 +0.1
875,214 + PGA1_c08460 0.43 +0.7
875,270 + PGA1_c08460 0.49 +0.2
875,270 + PGA1_c08460 0.49 -0.2
875,270 + PGA1_c08460 0.49 +0.1
875,270 + PGA1_c08460 0.49 -0.4
875,273 - PGA1_c08460 0.49 -0.6
875,278 - PGA1_c08460 0.50 -0.3
875,278 - PGA1_c08460 0.50 +0.9
875,281 + PGA1_c08460 0.50 -1.1
875,283 - PGA1_c08460 0.50 +0.5
875,299 + PGA1_c08460 0.52 +0.0
875,420 - PGA1_c08460 0.65 +0.2
875,438 + PGA1_c08460 0.66 -0.6
875,526 - PGA1_c08460 0.76 +1.1
875,616 + PGA1_c08460 0.85 +0.2
875,619 + PGA1_c08460 0.86 +1.1
875,635 - PGA1_c08460 0.87 +0.6
875,635 - PGA1_c08460 0.87 -0.6
875,663 + +0.8
875,686 + +0.1
875,694 - +0.1
875,696 + +0.3
875,696 + -0.3
875,696 + -1.4
875,704 - +0.2
875,704 - -0.8
875,704 - -0.3
875,704 - +0.1
875,704 - +0.4
875,704 - +0.9
875,704 - -0.1
875,704 - -0.5
875,704 - +2.2
875,708 + -0.1
875,728 - -0.9
875,746 - -0.4

Or see this region's nucleotide sequence