Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07990

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07970 and PGA1_c07980 are separated by 46 nucleotidesPGA1_c07980 and PGA1_c07990 overlap by 1 nucleotidesPGA1_c07990 and PGA1_c08000 are separated by 44 nucleotides PGA1_c07970: PGA1_c07970 - putative membrane transport protein, at 827,255 to 828,187 _c07970 PGA1_c07980: PGA1_c07980 - metallo beta-lactamase domain-containing protein, at 828,234 to 829,031 _c07980 PGA1_c07990: PGA1_c07990 - putative hydrolase, TatD family, at 829,031 to 829,852 _c07990 PGA1_c08000: PGA1_c08000 - DNA polymerase III, gamma/tau subunits, at 829,897 to 831,018 _c08000 Position (kb) 829 830Strain fitness (log2 ratio) -2 -1 0 1at 828.119 kb on + strandat 828.281 kb on + strandat 828.281 kb on + strandat 828.296 kb on - strandat 828.348 kb on + strand, within PGA1_c07980at 828.356 kb on - strand, within PGA1_c07980at 828.356 kb on - strand, within PGA1_c07980at 828.417 kb on + strand, within PGA1_c07980at 828.529 kb on - strand, within PGA1_c07980at 828.530 kb on + strand, within PGA1_c07980at 828.620 kb on + strand, within PGA1_c07980at 828.620 kb on + strand, within PGA1_c07980at 828.628 kb on - strand, within PGA1_c07980at 828.635 kb on + strand, within PGA1_c07980at 828.635 kb on + strand, within PGA1_c07980at 828.654 kb on - strand, within PGA1_c07980at 828.763 kb on + strand, within PGA1_c07980at 828.793 kb on + strand, within PGA1_c07980at 828.800 kb on - strand, within PGA1_c07980at 828.884 kb on + strand, within PGA1_c07980at 828.892 kb on - strand, within PGA1_c07980at 828.892 kb on - strand, within PGA1_c07980at 828.892 kb on - strand, within PGA1_c07980at 828.892 kb on - strand, within PGA1_c07980at 828.938 kb on - strand, within PGA1_c07980at 828.991 kb on - strandat 828.994 kb on - strandat 829.035 kb on - strandat 829.134 kb on - strand, within PGA1_c07990at 829.150 kb on - strand, within PGA1_c07990at 829.155 kb on + strand, within PGA1_c07990at 829.155 kb on + strand, within PGA1_c07990at 829.163 kb on - strand, within PGA1_c07990at 829.201 kb on + strand, within PGA1_c07990at 829.264 kb on + strand, within PGA1_c07990at 829.272 kb on - strand, within PGA1_c07990at 829.315 kb on - strand, within PGA1_c07990at 829.326 kb on - strand, within PGA1_c07990at 829.499 kb on + strand, within PGA1_c07990at 829.507 kb on + strand, within PGA1_c07990at 829.507 kb on + strand, within PGA1_c07990at 829.515 kb on - strand, within PGA1_c07990at 829.515 kb on - strand, within PGA1_c07990at 829.525 kb on - strand, within PGA1_c07990at 829.544 kb on + strand, within PGA1_c07990at 829.636 kb on - strand, within PGA1_c07990at 829.681 kb on + strand, within PGA1_c07990at 829.723 kb on - strand, within PGA1_c07990at 829.747 kb on - strand, within PGA1_c07990at 829.801 kb on + strandat 829.857 kb on + strandat 829.872 kb on - strandat 829.898 kb on - strandat 829.912 kb on + strandat 829.912 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml
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828,119 + +0.3
828,281 + -0.2
828,281 + +0.1
828,296 - -0.4
828,348 + PGA1_c07980 0.14 +0.4
828,356 - PGA1_c07980 0.15 +0.2
828,356 - PGA1_c07980 0.15 +0.1
828,417 + PGA1_c07980 0.23 +0.3
828,529 - PGA1_c07980 0.37 -0.2
828,530 + PGA1_c07980 0.37 +0.9
828,620 + PGA1_c07980 0.48 +0.4
828,620 + PGA1_c07980 0.48 +0.4
828,628 - PGA1_c07980 0.49 +0.3
828,635 + PGA1_c07980 0.50 +0.3
828,635 + PGA1_c07980 0.50 +1.2
828,654 - PGA1_c07980 0.53 +0.1
828,763 + PGA1_c07980 0.66 -0.2
828,793 + PGA1_c07980 0.70 +0.2
828,800 - PGA1_c07980 0.71 +0.1
828,884 + PGA1_c07980 0.81 -1.3
828,892 - PGA1_c07980 0.82 +0.6
828,892 - PGA1_c07980 0.82 -1.6
828,892 - PGA1_c07980 0.82 -0.6
828,892 - PGA1_c07980 0.82 -0.1
828,938 - PGA1_c07980 0.88 +0.4
828,991 - -0.2
828,994 - -0.3
829,035 - -0.3
829,134 - PGA1_c07990 0.13 -1.1
829,150 - PGA1_c07990 0.14 -0.0
829,155 + PGA1_c07990 0.15 +0.0
829,155 + PGA1_c07990 0.15 +0.3
829,163 - PGA1_c07990 0.16 -1.2
829,201 + PGA1_c07990 0.21 -1.2
829,264 + PGA1_c07990 0.28 -0.4
829,272 - PGA1_c07990 0.29 -1.0
829,315 - PGA1_c07990 0.35 -0.7
829,326 - PGA1_c07990 0.36 +0.1
829,499 + PGA1_c07990 0.57 -0.7
829,507 + PGA1_c07990 0.58 -0.1
829,507 + PGA1_c07990 0.58 -0.1
829,515 - PGA1_c07990 0.59 -0.2
829,515 - PGA1_c07990 0.59 -0.6
829,525 - PGA1_c07990 0.60 +0.9
829,544 + PGA1_c07990 0.62 -0.2
829,636 - PGA1_c07990 0.74 -0.3
829,681 + PGA1_c07990 0.79 -1.6
829,723 - PGA1_c07990 0.84 -0.6
829,747 - PGA1_c07990 0.87 -0.2
829,801 + -1.0
829,857 + -2.2
829,872 - +0.3
829,898 - +0.1
829,912 + -0.0
829,912 + +0.7

Or see this region's nucleotide sequence