Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06410 and PGA1_c06420 are separated by 207 nucleotides PGA1_c06420 and PGA1_c06430 are separated by 96 nucleotides PGA1_c06430 and PGA1_c06440 are separated by 121 nucleotides PGA1_c06440 and PGA1_c06450 are separated by 13 nucleotides
PGA1_c06410: PGA1_c06410 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 656,606 to 657,211
_c06410
PGA1_c06420: PGA1_c06420 - acetyltransferase domain-containing protein, at 657,419 to 657,928
_c06420
PGA1_c06430: PGA1_c06430 - hypothetical protein, at 658,025 to 658,804
_c06430
PGA1_c06440: PGA1_c06440 - Uncharacterized protein conserved in bacteria, at 658,926 to 659,456
_c06440
PGA1_c06450: PGA1_c06450 - short-chain dehydrogenases/reductase domain-containing protein, at 659,470 to 660,111
_c06450
Position (kb) 658
659 Strain fitness (log2 ratio) -1
0
1
2 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.058 kb on + strand, within PGA1_c06410 at 657.066 kb on - strand, within PGA1_c06410 at 657.066 kb on - strand, within PGA1_c06410 at 657.193 kb on + strand at 657.201 kb on - strand at 657.273 kb on - strand at 657.299 kb on - strand at 657.299 kb on - strand at 657.301 kb on + strand at 657.309 kb on - strand at 657.309 kb on - strand at 657.372 kb on + strand at 657.411 kb on + strand at 657.441 kb on + strand at 657.468 kb on - strand at 657.521 kb on - strand, within PGA1_c06420 at 657.557 kb on - strand, within PGA1_c06420 at 657.641 kb on - strand, within PGA1_c06420 at 657.641 kb on - strand, within PGA1_c06420 at 657.646 kb on - strand, within PGA1_c06420 at 657.712 kb on - strand, within PGA1_c06420 at 657.714 kb on + strand, within PGA1_c06420 at 657.815 kb on - strand, within PGA1_c06420 at 657.857 kb on - strand, within PGA1_c06420 at 657.862 kb on + strand, within PGA1_c06420 at 657.876 kb on - strand, within PGA1_c06420 at 657.896 kb on - strand at 657.898 kb on + strand at 658.052 kb on + strand at 658.052 kb on + strand at 658.057 kb on + strand at 658.060 kb on - strand at 658.065 kb on - strand at 658.065 kb on - strand at 658.065 kb on - strand at 658.229 kb on - strand, within PGA1_c06430 at 658.459 kb on + strand, within PGA1_c06430 at 658.467 kb on + strand, within PGA1_c06430 at 658.475 kb on - strand, within PGA1_c06430 at 658.549 kb on + strand, within PGA1_c06430 at 658.562 kb on + strand, within PGA1_c06430 at 658.570 kb on - strand, within PGA1_c06430 at 658.599 kb on + strand, within PGA1_c06430 at 658.654 kb on + strand, within PGA1_c06430 at 658.721 kb on - strand, within PGA1_c06430 at 658.721 kb on - strand, within PGA1_c06430 at 658.786 kb on - strand at 658.825 kb on - strand at 658.835 kb on + strand at 658.840 kb on + strand at 658.876 kb on + strand at 658.884 kb on - strand at 658.907 kb on + strand at 658.907 kb on + strand at 658.915 kb on + strand at 658.915 kb on + strand at 659.027 kb on - strand, within PGA1_c06440 at 659.103 kb on - strand, within PGA1_c06440 at 659.239 kb on + strand, within PGA1_c06440 at 659.259 kb on + strand, within PGA1_c06440 at 659.273 kb on + strand, within PGA1_c06440 at 659.274 kb on + strand, within PGA1_c06440 at 659.284 kb on + strand, within PGA1_c06440 at 659.312 kb on - strand, within PGA1_c06440 at 659.369 kb on + strand, within PGA1_c06440 at 659.384 kb on + strand, within PGA1_c06440 at 659.415 kb on + strand at 659.420 kb on + strand at 659.437 kb on - strand at 659.534 kb on - strand at 659.550 kb on + strand, within PGA1_c06450 at 659.566 kb on - strand, within PGA1_c06450 at 659.581 kb on - strand, within PGA1_c06450 at 659.639 kb on - strand, within PGA1_c06450 at 659.711 kb on - strand, within PGA1_c06450 at 659.713 kb on + strand, within PGA1_c06450 at 659.713 kb on + strand, within PGA1_c06450 at 659.721 kb on - strand, within PGA1_c06450 at 659.721 kb on - strand, within PGA1_c06450 at 659.726 kb on - strand, within PGA1_c06450 at 659.726 kb on - strand, within PGA1_c06450 at 659.730 kb on + strand, within PGA1_c06450 at 659.795 kb on - strand, within PGA1_c06450 at 659.798 kb on + strand, within PGA1_c06450
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 657,058 + PGA1_c06410 0.75 -0.1 657,058 + PGA1_c06410 0.75 -0.1 657,058 + PGA1_c06410 0.75 -0.1 657,058 + PGA1_c06410 0.75 -0.0 657,058 + PGA1_c06410 0.75 +0.4 657,066 - PGA1_c06410 0.76 -0.6 657,066 - PGA1_c06410 0.76 +0.0 657,193 + -0.1 657,201 - +0.2 657,273 - -0.5 657,299 - +0.7 657,299 - +0.7 657,301 + +0.5 657,309 - +0.8 657,309 - -0.7 657,372 + -0.6 657,411 + -0.2 657,441 + +1.8 657,468 - +1.0 657,521 - PGA1_c06420 0.20 +1.7 657,557 - PGA1_c06420 0.27 +1.7 657,641 - PGA1_c06420 0.44 +1.0 657,641 - PGA1_c06420 0.44 +0.8 657,646 - PGA1_c06420 0.45 +1.5 657,712 - PGA1_c06420 0.57 +1.4 657,714 + PGA1_c06420 0.58 +1.7 657,815 - PGA1_c06420 0.78 +0.1 657,857 - PGA1_c06420 0.86 -0.6 657,862 + PGA1_c06420 0.87 +1.1 657,876 - PGA1_c06420 0.90 +0.6 657,896 - +1.0 657,898 + +0.1 658,052 + -0.9 658,052 + +0.8 658,057 + -1.2 658,060 - +0.1 658,065 - -0.6 658,065 - -0.4 658,065 - -1.0 658,229 - PGA1_c06430 0.26 -0.5 658,459 + PGA1_c06430 0.56 -0.6 658,467 + PGA1_c06430 0.57 +0.3 658,475 - PGA1_c06430 0.58 +0.2 658,549 + PGA1_c06430 0.67 -0.5 658,562 + PGA1_c06430 0.69 -1.3 658,570 - PGA1_c06430 0.70 +0.3 658,599 + PGA1_c06430 0.74 -0.5 658,654 + PGA1_c06430 0.81 -0.8 658,721 - PGA1_c06430 0.89 -1.1 658,721 - PGA1_c06430 0.89 -1.1 658,786 - -1.6 658,825 - +0.3 658,835 + +1.1 658,840 + +1.0 658,876 + -0.9 658,884 - +0.4 658,907 + +1.2 658,907 + -0.2 658,915 + +0.6 658,915 + +0.5 659,027 - PGA1_c06440 0.19 +0.1 659,103 - PGA1_c06440 0.33 -0.6 659,239 + PGA1_c06440 0.59 -0.7 659,259 + PGA1_c06440 0.63 -1.2 659,273 + PGA1_c06440 0.65 -1.0 659,274 + PGA1_c06440 0.66 +0.0 659,284 + PGA1_c06440 0.67 -0.8 659,312 - PGA1_c06440 0.73 +0.6 659,369 + PGA1_c06440 0.83 -0.5 659,384 + PGA1_c06440 0.86 -0.5 659,415 + -0.7 659,420 + +0.5 659,437 - -0.9 659,534 - -0.6 659,550 + PGA1_c06450 0.12 +0.7 659,566 - PGA1_c06450 0.15 +0.1 659,581 - PGA1_c06450 0.17 +0.4 659,639 - PGA1_c06450 0.26 +0.8 659,711 - PGA1_c06450 0.38 -0.0 659,713 + PGA1_c06450 0.38 -0.5 659,713 + PGA1_c06450 0.38 -1.2 659,721 - PGA1_c06450 0.39 -0.3 659,721 - PGA1_c06450 0.39 -0.0 659,726 - PGA1_c06450 0.40 -0.0 659,726 - PGA1_c06450 0.40 +0.6 659,730 + PGA1_c06450 0.40 +1.4 659,795 - PGA1_c06450 0.51 +1.5 659,798 + PGA1_c06450 0.51 -0.8
Or see this region's nucleotide sequence