Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04970

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04960 and PGA1_c04970 are separated by 58 nucleotidesPGA1_c04970 and PGA1_c04980 are separated by 268 nucleotides PGA1_c04960: PGA1_c04960 - putative non-specific ribonucleoside hydrolase, at 487,534 to 488,454 _c04960 PGA1_c04970: PGA1_c04970 - hypothetical protein, at 488,513 to 488,812 _c04970 PGA1_c04980: PGA1_c04980 - putative transposase, at 489,081 to 489,872 _c04980 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 487.517 kb on - strandat 487.566 kb on - strandat 487.573 kb on - strandat 487.610 kb on + strandat 487.653 kb on + strand, within PGA1_c04960at 487.699 kb on + strand, within PGA1_c04960at 487.700 kb on + strand, within PGA1_c04960at 487.707 kb on - strand, within PGA1_c04960at 487.708 kb on - strand, within PGA1_c04960at 487.735 kb on + strand, within PGA1_c04960at 487.759 kb on + strand, within PGA1_c04960at 487.778 kb on + strand, within PGA1_c04960at 487.820 kb on - strand, within PGA1_c04960at 487.828 kb on - strand, within PGA1_c04960at 487.832 kb on - strand, within PGA1_c04960at 487.923 kb on - strand, within PGA1_c04960at 487.935 kb on + strand, within PGA1_c04960at 487.945 kb on + strand, within PGA1_c04960at 487.959 kb on + strand, within PGA1_c04960at 487.980 kb on - strand, within PGA1_c04960at 487.988 kb on + strand, within PGA1_c04960at 487.988 kb on + strand, within PGA1_c04960at 487.988 kb on + strand, within PGA1_c04960at 487.996 kb on - strand, within PGA1_c04960at 487.996 kb on - strand, within PGA1_c04960at 487.996 kb on - strand, within PGA1_c04960at 487.996 kb on - strand, within PGA1_c04960at 488.083 kb on - strand, within PGA1_c04960at 488.096 kb on + strand, within PGA1_c04960at 488.096 kb on + strand, within PGA1_c04960at 488.096 kb on + strand, within PGA1_c04960at 488.096 kb on + strand, within PGA1_c04960at 488.096 kb on + strand, within PGA1_c04960at 488.096 kb on + strand, within PGA1_c04960at 488.104 kb on - strand, within PGA1_c04960at 488.104 kb on - strand, within PGA1_c04960at 488.115 kb on - strand, within PGA1_c04960at 488.126 kb on - strand, within PGA1_c04960at 488.146 kb on + strand, within PGA1_c04960at 488.159 kb on + strand, within PGA1_c04960at 488.164 kb on + strand, within PGA1_c04960at 488.167 kb on - strand, within PGA1_c04960at 488.177 kb on - strand, within PGA1_c04960at 488.284 kb on + strand, within PGA1_c04960at 488.286 kb on + strand, within PGA1_c04960at 488.329 kb on + strand, within PGA1_c04960at 488.332 kb on - strand, within PGA1_c04960at 488.337 kb on - strand, within PGA1_c04960at 488.337 kb on - strand, within PGA1_c04960at 488.366 kb on + strandat 488.448 kb on + strandat 488.448 kb on + strandat 488.448 kb on + strandat 488.448 kb on + strandat 488.456 kb on - strandat 488.472 kb on + strandat 488.501 kb on - strandat 488.558 kb on - strand, within PGA1_c04970at 488.610 kb on - strand, within PGA1_c04970at 488.641 kb on - strand, within PGA1_c04970at 488.646 kb on - strand, within PGA1_c04970at 488.650 kb on + strand, within PGA1_c04970at 488.659 kb on - strand, within PGA1_c04970at 488.659 kb on - strand, within PGA1_c04970at 488.714 kb on - strand, within PGA1_c04970at 488.738 kb on + strand, within PGA1_c04970at 488.754 kb on + strand, within PGA1_c04970at 488.754 kb on + strand, within PGA1_c04970at 488.759 kb on + strand, within PGA1_c04970at 488.764 kb on + strand, within PGA1_c04970at 488.764 kb on + strand, within PGA1_c04970at 488.764 kb on + strand, within PGA1_c04970at 488.769 kb on + strand, within PGA1_c04970at 488.769 kb on + strand, within PGA1_c04970at 488.774 kb on + strand, within PGA1_c04970at 488.774 kb on + strand, within PGA1_c04970at 488.777 kb on - strand, within PGA1_c04970at 488.777 kb on - strand, within PGA1_c04970at 488.782 kb on - strand, within PGA1_c04970at 488.816 kb on - strandat 488.867 kb on - strandat 488.902 kb on - strandat 488.933 kb on + strandat 488.941 kb on + strandat 488.942 kb on - strandat 488.949 kb on - strandat 489.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml
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487,517 - -0.1
487,566 - +2.0
487,573 - +0.1
487,610 + +0.7
487,653 + PGA1_c04960 0.13 +0.5
487,699 + PGA1_c04960 0.18 +0.2
487,700 + PGA1_c04960 0.18 -1.4
487,707 - PGA1_c04960 0.19 +1.5
487,708 - PGA1_c04960 0.19 -0.4
487,735 + PGA1_c04960 0.22 +0.1
487,759 + PGA1_c04960 0.24 -0.9
487,778 + PGA1_c04960 0.26 -0.7
487,820 - PGA1_c04960 0.31 -0.8
487,828 - PGA1_c04960 0.32 +1.2
487,832 - PGA1_c04960 0.32 +1.5
487,923 - PGA1_c04960 0.42 +1.5
487,935 + PGA1_c04960 0.44 -0.9
487,945 + PGA1_c04960 0.45 -0.3
487,959 + PGA1_c04960 0.46 -0.2
487,980 - PGA1_c04960 0.48 +0.6
487,988 + PGA1_c04960 0.49 +1.7
487,988 + PGA1_c04960 0.49 -0.3
487,988 + PGA1_c04960 0.49 +0.8
487,996 - PGA1_c04960 0.50 -1.0
487,996 - PGA1_c04960 0.50 -0.1
487,996 - PGA1_c04960 0.50 +0.2
487,996 - PGA1_c04960 0.50 -0.1
488,083 - PGA1_c04960 0.60 +0.6
488,096 + PGA1_c04960 0.61 +1.1
488,096 + PGA1_c04960 0.61 -0.3
488,096 + PGA1_c04960 0.61 +0.9
488,096 + PGA1_c04960 0.61 +0.5
488,096 + PGA1_c04960 0.61 -0.3
488,096 + PGA1_c04960 0.61 +0.1
488,104 - PGA1_c04960 0.62 -2.2
488,104 - PGA1_c04960 0.62 -0.4
488,115 - PGA1_c04960 0.63 -0.1
488,126 - PGA1_c04960 0.64 +0.4
488,146 + PGA1_c04960 0.66 -0.4
488,159 + PGA1_c04960 0.68 -1.3
488,164 + PGA1_c04960 0.68 +0.7
488,167 - PGA1_c04960 0.69 -0.2
488,177 - PGA1_c04960 0.70 +0.7
488,284 + PGA1_c04960 0.81 +0.2
488,286 + PGA1_c04960 0.82 +0.8
488,329 + PGA1_c04960 0.86 +0.2
488,332 - PGA1_c04960 0.87 +0.8
488,337 - PGA1_c04960 0.87 -3.0
488,337 - PGA1_c04960 0.87 -0.6
488,366 + +0.7
488,448 + -0.2
488,448 + -0.3
488,448 + +0.1
488,448 + -0.1
488,456 - +0.5
488,472 + -0.1
488,501 - +0.7
488,558 - PGA1_c04970 0.15 -0.0
488,610 - PGA1_c04970 0.32 +0.4
488,641 - PGA1_c04970 0.43 +1.1
488,646 - PGA1_c04970 0.44 +0.4
488,650 + PGA1_c04970 0.46 +0.2
488,659 - PGA1_c04970 0.49 +0.1
488,659 - PGA1_c04970 0.49 -0.4
488,714 - PGA1_c04970 0.67 -0.3
488,738 + PGA1_c04970 0.75 -2.4
488,754 + PGA1_c04970 0.80 +0.8
488,754 + PGA1_c04970 0.80 +0.6
488,759 + PGA1_c04970 0.82 -0.5
488,764 + PGA1_c04970 0.84 +0.1
488,764 + PGA1_c04970 0.84 -0.7
488,764 + PGA1_c04970 0.84 +0.7
488,769 + PGA1_c04970 0.85 -1.4
488,769 + PGA1_c04970 0.85 +0.2
488,774 + PGA1_c04970 0.87 +0.2
488,774 + PGA1_c04970 0.87 +0.2
488,777 - PGA1_c04970 0.88 -0.2
488,777 - PGA1_c04970 0.88 -0.1
488,782 - PGA1_c04970 0.90 -0.9
488,816 - +0.6
488,867 - -0.0
488,902 - +0.2
488,933 + -0.2
488,941 + -0.0
488,942 - +0.2
488,949 - +0.2
489,023 - -2.0

Or see this region's nucleotide sequence