Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04160 and PGA1_c04170 are separated by 65 nucleotides PGA1_c04170 and PGA1_c04180 are separated by 176 nucleotides
PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774
_c04160
PGA1_c04170: PGA1_c04170 - ribulose-phosphate 3-epimerase Rpe, at 404,840 to 405,529
_c04170
PGA1_c04180: PGA1_c04180 - phosphonates import ATP-binding protein PhnC, at 405,706 to 406,524
_c04180
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1 at 403.842 kb on + strand, within PGA1_c04160 at 403.847 kb on + strand, within PGA1_c04160 at 403.847 kb on + strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.855 kb on - strand, within PGA1_c04160 at 403.857 kb on + strand, within PGA1_c04160 at 403.865 kb on - strand, within PGA1_c04160 at 403.875 kb on + strand, within PGA1_c04160 at 403.883 kb on - strand, within PGA1_c04160 at 403.892 kb on + strand, within PGA1_c04160 at 403.926 kb on - strand, within PGA1_c04160 at 403.943 kb on + strand, within PGA1_c04160 at 403.943 kb on + strand, within PGA1_c04160 at 403.951 kb on - strand, within PGA1_c04160 at 403.976 kb on + strand, within PGA1_c04160 at 403.989 kb on - strand, within PGA1_c04160 at 403.991 kb on + strand, within PGA1_c04160 at 404.047 kb on + strand, within PGA1_c04160 at 404.054 kb on - strand, within PGA1_c04160 at 404.055 kb on + strand, within PGA1_c04160 at 404.087 kb on + strand, within PGA1_c04160 at 404.100 kb on - strand, within PGA1_c04160 at 404.129 kb on - strand, within PGA1_c04160 at 404.189 kb on + strand, within PGA1_c04160 at 404.194 kb on + strand, within PGA1_c04160 at 404.209 kb on + strand, within PGA1_c04160 at 404.244 kb on - strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.251 kb on + strand, within PGA1_c04160 at 404.253 kb on + strand, within PGA1_c04160 at 404.254 kb on - strand, within PGA1_c04160 at 404.259 kb on - strand, within PGA1_c04160 at 404.259 kb on - strand, within PGA1_c04160 at 404.276 kb on - strand, within PGA1_c04160 at 404.301 kb on + strand, within PGA1_c04160 at 404.301 kb on + strand, within PGA1_c04160 at 404.370 kb on + strand, within PGA1_c04160 at 404.372 kb on + strand, within PGA1_c04160 at 404.589 kb on + strand, within PGA1_c04160 at 404.611 kb on + strand, within PGA1_c04160 at 404.659 kb on - strand at 404.664 kb on + strand at 404.696 kb on + strand at 404.754 kb on + strand at 404.822 kb on - strand at 405.587 kb on - strand at 405.619 kb on + strand at 405.670 kb on + strand at 405.670 kb on + strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.678 kb on - strand at 405.680 kb on + strand at 405.680 kb on + strand at 405.688 kb on - strand at 405.688 kb on - strand at 405.701 kb on + strand at 405.701 kb on + strand at 405.708 kb on - strand at 405.756 kb on + strand at 405.756 kb on + strand at 405.799 kb on + strand, within PGA1_c04180 at 405.861 kb on + strand, within PGA1_c04180 at 405.890 kb on + strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.898 kb on - strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.899 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.914 kb on + strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.961 kb on - strand, within PGA1_c04180 at 405.963 kb on + strand, within PGA1_c04180 at 405.971 kb on - strand, within PGA1_c04180 at 406.003 kb on - strand, within PGA1_c04180 at 406.012 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.044 kb on + strand, within PGA1_c04180 at 406.106 kb on - strand, within PGA1_c04180 at 406.140 kb on + strand, within PGA1_c04180 at 406.148 kb on - strand, within PGA1_c04180 at 406.150 kb on - strand, within PGA1_c04180 at 406.155 kb on - strand, within PGA1_c04180 at 406.340 kb on - strand, within PGA1_c04180 at 406.398 kb on + strand, within PGA1_c04180 at 406.453 kb on + strand at 406.468 kb on - strand at 406.485 kb on - strand at 406.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 403,842 + PGA1_c04160 0.38 -0.2 403,847 + PGA1_c04160 0.38 +1.1 403,847 + PGA1_c04160 0.38 -0.0 403,855 - PGA1_c04160 0.39 +1.0 403,855 - PGA1_c04160 0.39 -0.6 403,855 - PGA1_c04160 0.39 -0.7 403,857 + PGA1_c04160 0.39 +0.4 403,865 - PGA1_c04160 0.40 +1.1 403,875 + PGA1_c04160 0.40 -0.5 403,883 - PGA1_c04160 0.41 -1.0 403,892 + PGA1_c04160 0.41 +0.9 403,926 - PGA1_c04160 0.44 -0.7 403,943 + PGA1_c04160 0.45 -1.7 403,943 + PGA1_c04160 0.45 -0.1 403,951 - PGA1_c04160 0.45 -1.7 403,976 + PGA1_c04160 0.47 +0.5 403,989 - PGA1_c04160 0.48 +0.4 403,991 + PGA1_c04160 0.48 +0.2 404,047 + PGA1_c04160 0.52 -0.3 404,054 - PGA1_c04160 0.52 -0.2 404,055 + PGA1_c04160 0.52 -0.4 404,087 + PGA1_c04160 0.54 -0.6 404,100 - PGA1_c04160 0.55 -0.2 404,129 - PGA1_c04160 0.57 -0.1 404,189 + PGA1_c04160 0.61 +0.4 404,194 + PGA1_c04160 0.61 -0.2 404,209 + PGA1_c04160 0.62 -0.1 404,244 - PGA1_c04160 0.65 +0.3 404,251 + PGA1_c04160 0.65 -0.2 404,251 + PGA1_c04160 0.65 -0.2 404,251 + PGA1_c04160 0.65 +0.4 404,251 + PGA1_c04160 0.65 -1.3 404,253 + PGA1_c04160 0.65 -0.3 404,254 - PGA1_c04160 0.65 -1.9 404,259 - PGA1_c04160 0.66 -1.5 404,259 - PGA1_c04160 0.66 +0.2 404,276 - PGA1_c04160 0.67 -1.3 404,301 + PGA1_c04160 0.69 -1.7 404,301 + PGA1_c04160 0.69 -0.8 404,370 + PGA1_c04160 0.73 -0.3 404,372 + PGA1_c04160 0.73 +0.0 404,589 + PGA1_c04160 0.88 +1.2 404,611 + PGA1_c04160 0.89 -0.7 404,659 - +0.3 404,664 + +0.8 404,696 + -1.4 404,754 + -0.5 404,822 - +0.1 405,587 - -0.9 405,619 + -2.4 405,670 + -0.1 405,670 + -0.6 405,678 - +0.5 405,678 - -0.1 405,678 - -0.2 405,680 + -0.1 405,680 + +0.3 405,688 - -0.2 405,688 - +1.2 405,701 + -0.9 405,701 + +0.4 405,708 - +0.5 405,756 + -0.5 405,756 + -1.2 405,799 + PGA1_c04180 0.11 +1.7 405,861 + PGA1_c04180 0.19 -0.1 405,890 + PGA1_c04180 0.22 -0.7 405,898 - PGA1_c04180 0.23 +0.2 405,898 - PGA1_c04180 0.23 -0.2 405,899 + PGA1_c04180 0.24 -0.4 405,899 + PGA1_c04180 0.24 +1.0 405,914 + PGA1_c04180 0.25 +0.4 405,914 + PGA1_c04180 0.25 +0.3 405,961 - PGA1_c04180 0.31 -0.4 405,961 - PGA1_c04180 0.31 +0.5 405,963 + PGA1_c04180 0.31 -0.3 405,971 - PGA1_c04180 0.32 -0.7 406,003 - PGA1_c04180 0.36 -0.4 406,012 + PGA1_c04180 0.37 +0.4 406,044 + PGA1_c04180 0.41 -0.3 406,044 + PGA1_c04180 0.41 -1.0 406,044 + PGA1_c04180 0.41 -0.4 406,106 - PGA1_c04180 0.49 -0.7 406,140 + PGA1_c04180 0.53 +0.4 406,148 - PGA1_c04180 0.54 -1.9 406,150 - PGA1_c04180 0.54 +0.8 406,155 - PGA1_c04180 0.55 -0.3 406,340 - PGA1_c04180 0.77 +0.2 406,398 + PGA1_c04180 0.84 -0.2 406,453 + +0.2 406,468 - +0.2 406,485 - -0.2 406,485 - -0.8
Or see this region's nucleotide sequence