Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04040 and PGA1_c04050 are separated by 10 nucleotides PGA1_c04050 and PGA1_c04060 are separated by 122 nucleotides PGA1_c04060 and PGA1_c04070 overlap by 1 nucleotides PGA1_c04070 and PGA1_c04080 are separated by 73 nucleotides
PGA1_c04040: PGA1_c04040 - phenylacetic acid degradation NADH oxidoreductase PaaE, at 389,769 to 390,842
_c04040
PGA1_c04050: PGA1_c04050 - phenylacetic acid degradation protein PaaD, at 390,853 to 391,326
_c04050
PGA1_c04060: PGA1_c04060 - phenylacetic acid degradation protein PaaC, at 391,449 to 392,222
_c04060
PGA1_c04070: PGA1_c04070 - phenylacetic acid degradation protein PaaB, at 392,222 to 392,506
_c04070
PGA1_c04080: PGA1_c04080 - phenylacetic acid degradation protein PaaA, at 392,580 to 393,557
_c04080
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.453 kb on - strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.461 kb on + strand, within PGA1_c04040 at 390.496 kb on + strand, within PGA1_c04040 at 390.504 kb on - strand, within PGA1_c04040 at 390.597 kb on + strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.605 kb on - strand, within PGA1_c04040 at 390.651 kb on + strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.654 kb on - strand, within PGA1_c04040 at 390.681 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.686 kb on + strand, within PGA1_c04040 at 390.694 kb on - strand, within PGA1_c04040 at 390.715 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.720 kb on + strand, within PGA1_c04040 at 390.723 kb on - strand, within PGA1_c04040 at 390.728 kb on - strand, within PGA1_c04040 at 390.728 kb on - strand, within PGA1_c04040 at 390.826 kb on - strand at 390.851 kb on + strand at 390.851 kb on + strand at 390.851 kb on + strand at 390.859 kb on - strand at 390.879 kb on + strand at 390.879 kb on + strand at 390.887 kb on - strand at 390.888 kb on + strand at 390.892 kb on - strand at 390.909 kb on - strand, within PGA1_c04050 at 390.948 kb on + strand, within PGA1_c04050 at 390.999 kb on - strand, within PGA1_c04050 at 391.009 kb on + strand, within PGA1_c04050 at 391.047 kb on + strand, within PGA1_c04050 at 391.080 kb on - strand, within PGA1_c04050 at 391.080 kb on - strand, within PGA1_c04050 at 391.173 kb on + strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.181 kb on - strand, within PGA1_c04050 at 391.193 kb on - strand, within PGA1_c04050 at 391.201 kb on + strand, within PGA1_c04050 at 391.210 kb on - strand, within PGA1_c04050 at 391.225 kb on + strand, within PGA1_c04050 at 391.261 kb on + strand, within PGA1_c04050 at 391.280 kb on - strand at 391.379 kb on - strand at 391.380 kb on - strand at 391.380 kb on - strand at 391.380 kb on - strand at 391.440 kb on + strand at 391.493 kb on + strand at 391.494 kb on + strand at 391.580 kb on - strand, within PGA1_c04060 at 391.592 kb on + strand, within PGA1_c04060 at 391.642 kb on + strand, within PGA1_c04060 at 391.692 kb on + strand, within PGA1_c04060 at 391.719 kb on + strand, within PGA1_c04060 at 391.767 kb on - strand, within PGA1_c04060 at 391.808 kb on - strand, within PGA1_c04060 at 391.858 kb on - strand, within PGA1_c04060 at 391.866 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.028 kb on - strand, within PGA1_c04060 at 392.073 kb on - strand, within PGA1_c04060 at 392.073 kb on - strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.080 kb on + strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.088 kb on - strand, within PGA1_c04060 at 392.121 kb on + strand, within PGA1_c04060 at 392.151 kb on + strand at 392.178 kb on - strand at 392.217 kb on + strand at 392.217 kb on + strand at 392.268 kb on + strand, within PGA1_c04070 at 392.275 kb on + strand, within PGA1_c04070 at 392.276 kb on - strand, within PGA1_c04070 at 392.282 kb on - strand, within PGA1_c04070 at 392.283 kb on - strand, within PGA1_c04070 at 392.329 kb on - strand, within PGA1_c04070 at 392.378 kb on + strand, within PGA1_c04070 at 392.386 kb on + strand, within PGA1_c04070 at 392.433 kb on + strand, within PGA1_c04070 at 392.439 kb on + strand, within PGA1_c04070 at 392.441 kb on - strand, within PGA1_c04070 at 392.457 kb on - strand, within PGA1_c04070 at 392.457 kb on - strand, within PGA1_c04070 at 392.522 kb on + strand at 392.530 kb on - strand at 392.537 kb on + strand at 392.577 kb on + strand at 392.577 kb on + strand at 392.580 kb on - strand at 392.656 kb on + strand at 392.663 kb on - strand at 392.664 kb on - strand at 392.675 kb on + strand at 392.677 kb on + strand at 392.685 kb on - strand, within PGA1_c04080 at 392.701 kb on + strand, within PGA1_c04080 at 392.715 kb on - strand, within PGA1_c04080 at 392.804 kb on + strand, within PGA1_c04080 at 392.810 kb on + strand, within PGA1_c04080 at 392.852 kb on - strand, within PGA1_c04080 at 392.874 kb on - strand, within PGA1_c04080 at 392.902 kb on + strand, within PGA1_c04080 at 392.924 kb on - strand, within PGA1_c04080 at 393.008 kb on - strand, within PGA1_c04080 at 393.025 kb on + strand, within PGA1_c04080 at 393.096 kb on - strand, within PGA1_c04080 at 393.136 kb on + strand, within PGA1_c04080 at 393.169 kb on + strand, within PGA1_c04080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 390,453 - PGA1_c04040 0.64 -0.0 390,461 + PGA1_c04040 0.64 -0.3 390,461 + PGA1_c04040 0.64 -0.2 390,496 + PGA1_c04040 0.68 -0.3 390,504 - PGA1_c04040 0.68 -0.9 390,597 + PGA1_c04040 0.77 +0.6 390,605 - PGA1_c04040 0.78 +0.3 390,605 - PGA1_c04040 0.78 +1.2 390,651 + PGA1_c04040 0.82 -0.5 390,654 - PGA1_c04040 0.82 +0.5 390,654 - PGA1_c04040 0.82 -0.0 390,681 + PGA1_c04040 0.85 -0.9 390,686 + PGA1_c04040 0.85 +0.5 390,686 + PGA1_c04040 0.85 +0.0 390,694 - PGA1_c04040 0.86 +0.5 390,715 + PGA1_c04040 0.88 -0.2 390,720 + PGA1_c04040 0.89 +1.2 390,720 + PGA1_c04040 0.89 +0.2 390,720 + PGA1_c04040 0.89 +0.3 390,720 + PGA1_c04040 0.89 +0.2 390,723 - PGA1_c04040 0.89 -0.1 390,728 - PGA1_c04040 0.89 +0.1 390,728 - PGA1_c04040 0.89 +0.4 390,826 - -0.1 390,851 + +0.3 390,851 + -0.0 390,851 + -2.8 390,859 - +0.5 390,879 + +0.2 390,879 + -0.6 390,887 - -0.0 390,888 + -0.6 390,892 - -0.0 390,909 - PGA1_c04050 0.12 +1.1 390,948 + PGA1_c04050 0.20 +0.5 390,999 - PGA1_c04050 0.31 +0.1 391,009 + PGA1_c04050 0.33 -0.4 391,047 + PGA1_c04050 0.41 -0.0 391,080 - PGA1_c04050 0.48 +0.1 391,080 - PGA1_c04050 0.48 +0.3 391,173 + PGA1_c04050 0.68 -1.0 391,181 - PGA1_c04050 0.69 -0.3 391,181 - PGA1_c04050 0.69 +0.3 391,181 - PGA1_c04050 0.69 -0.3 391,193 - PGA1_c04050 0.72 -0.8 391,201 + PGA1_c04050 0.73 +1.2 391,210 - PGA1_c04050 0.75 -0.8 391,225 + PGA1_c04050 0.78 -0.0 391,261 + PGA1_c04050 0.86 +0.1 391,280 - +0.9 391,379 - +0.3 391,380 - +0.1 391,380 - -0.8 391,380 - +0.4 391,440 + -0.5 391,493 + +0.1 391,494 + +0.3 391,580 - PGA1_c04060 0.17 -0.3 391,592 + PGA1_c04060 0.18 -0.1 391,642 + PGA1_c04060 0.25 -1.9 391,692 + PGA1_c04060 0.31 +0.3 391,719 + PGA1_c04060 0.35 -0.5 391,767 - PGA1_c04060 0.41 +0.5 391,808 - PGA1_c04060 0.46 +0.3 391,858 - PGA1_c04060 0.53 -0.0 391,866 - PGA1_c04060 0.54 -2.6 392,028 - PGA1_c04060 0.75 -0.3 392,028 - PGA1_c04060 0.75 -1.1 392,028 - PGA1_c04060 0.75 -0.1 392,073 - PGA1_c04060 0.81 +0.4 392,073 - PGA1_c04060 0.81 +0.2 392,080 + PGA1_c04060 0.82 +1.2 392,080 + PGA1_c04060 0.82 +0.8 392,080 + PGA1_c04060 0.82 -0.3 392,080 + PGA1_c04060 0.82 -0.0 392,080 + PGA1_c04060 0.82 -0.0 392,080 + PGA1_c04060 0.82 +0.1 392,088 - PGA1_c04060 0.83 +0.6 392,088 - PGA1_c04060 0.83 +0.6 392,088 - PGA1_c04060 0.83 -0.4 392,088 - PGA1_c04060 0.83 +0.6 392,088 - PGA1_c04060 0.83 -1.2 392,121 + PGA1_c04060 0.87 -0.8 392,151 + +0.5 392,178 - +1.4 392,217 + +0.1 392,217 + -0.1 392,268 + PGA1_c04070 0.16 +0.3 392,275 + PGA1_c04070 0.19 -1.3 392,276 - PGA1_c04070 0.19 +0.3 392,282 - PGA1_c04070 0.21 +0.6 392,283 - PGA1_c04070 0.21 -0.2 392,329 - PGA1_c04070 0.38 -1.3 392,378 + PGA1_c04070 0.55 +0.7 392,386 + PGA1_c04070 0.58 -0.1 392,433 + PGA1_c04070 0.74 -0.0 392,439 + PGA1_c04070 0.76 -0.3 392,441 - PGA1_c04070 0.77 -0.4 392,457 - PGA1_c04070 0.82 -0.2 392,457 - PGA1_c04070 0.82 +0.0 392,522 + +0.3 392,530 - -2.1 392,537 + +0.9 392,577 + +0.2 392,577 + +0.2 392,580 - +0.6 392,656 + +0.3 392,663 - -0.7 392,664 - +0.1 392,675 + -0.5 392,677 + -0.1 392,685 - PGA1_c04080 0.11 +0.0 392,701 + PGA1_c04080 0.12 -0.1 392,715 - PGA1_c04080 0.14 -1.0 392,804 + PGA1_c04080 0.23 -0.2 392,810 + PGA1_c04080 0.24 -0.7 392,852 - PGA1_c04080 0.28 -0.1 392,874 - PGA1_c04080 0.30 +1.2 392,902 + PGA1_c04080 0.33 -0.1 392,924 - PGA1_c04080 0.35 -0.1 393,008 - PGA1_c04080 0.44 -1.2 393,025 + PGA1_c04080 0.46 -0.1 393,096 - PGA1_c04080 0.53 -0.3 393,136 + PGA1_c04080 0.57 +0.5 393,169 + PGA1_c04080 0.60 -0.2
Or see this region's nucleotide sequence