Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00230 and PGA1_65p00240 are separated by 531 nucleotides PGA1_65p00240 and PGA1_65p00250 are separated by 3 nucleotides PGA1_65p00250 and PGA1_65p00260 are separated by 129 nucleotides
PGA1_65p00230: PGA1_65p00230 - dTDP-4-dehydrorhamnose reductase RfbD, at 29,374 to 30,222
_65p00230
PGA1_65p00240: PGA1_65p00240 - dTDP-glucose 4,6-dehydratase RffG, at 30,754 to 31,806
_65p00240
PGA1_65p00250: PGA1_65p00250 - dTDP-4-dehydrorhamnose 3,5-epimerase RfbC, at 31,810 to 32,445
_65p00250
PGA1_65p00260: PGA1_65p00260 - putative metallopeptidase, at 32,575 to 34,026
_65p00260
Position (kb) 30
31
32 Strain fitness (log2 ratio) -1
0
1
2 at 29.931 kb on + strand, within PGA1_65p00230 at 29.991 kb on + strand, within PGA1_65p00230 at 30.260 kb on - strand at 30.261 kb on - strand at 30.294 kb on - strand at 30.354 kb on - strand at 30.537 kb on - strand at 30.631 kb on + strand at 30.847 kb on + strand at 30.855 kb on - strand at 31.249 kb on - strand, within PGA1_65p00240 at 31.274 kb on - strand, within PGA1_65p00240 at 31.286 kb on - strand, within PGA1_65p00240 at 31.298 kb on - strand, within PGA1_65p00240 at 31.450 kb on - strand, within PGA1_65p00240 at 31.652 kb on - strand, within PGA1_65p00240 at 31.698 kb on + strand, within PGA1_65p00240 at 31.969 kb on + strand, within PGA1_65p00250 at 32.372 kb on + strand, within PGA1_65p00250 at 32.380 kb on - strand, within PGA1_65p00250 at 32.393 kb on + strand at 32.456 kb on + strand at 32.464 kb on - strand at 32.469 kb on - strand at 32.537 kb on + strand at 32.574 kb on + strand at 32.632 kb on - strand at 32.805 kb on - strand, within PGA1_65p00260
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 29,931 + PGA1_65p00230 0.66 +0.4 29,991 + PGA1_65p00230 0.73 -0.2 30,260 - -0.6 30,261 - -0.7 30,294 - +0.1 30,354 - +0.0 30,537 - +2.1 30,631 + +1.0 30,847 + +0.7 30,855 - +0.1 31,249 - PGA1_65p00240 0.47 -0.9 31,274 - PGA1_65p00240 0.49 +0.8 31,286 - PGA1_65p00240 0.51 -1.2 31,298 - PGA1_65p00240 0.52 -0.0 31,450 - PGA1_65p00240 0.66 -0.2 31,652 - PGA1_65p00240 0.85 +0.1 31,698 + PGA1_65p00240 0.90 -1.3 31,969 + PGA1_65p00250 0.25 +0.9 32,372 + PGA1_65p00250 0.88 -0.3 32,380 - PGA1_65p00250 0.90 -0.3 32,393 + -0.9 32,456 + +1.4 32,464 - +0.3 32,469 - +0.4 32,537 + -0.7 32,574 + +0.6 32,632 - -1.2 32,805 - PGA1_65p00260 0.16 +1.1
Or see this region's nucleotide sequence