Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00520 and PGA1_78p00530 are separated by 3 nucleotides PGA1_78p00530 and PGA1_78p00540 are separated by 200 nucleotides PGA1_78p00540 and PGA1_78p00550 are separated by 118 nucleotides PGA1_78p00550 and PGA1_78p00560 overlap by 4 nucleotides PGA1_78p00560 and PGA1_78p00570 are separated by 60 nucleotides
PGA1_78p00520: PGA1_78p00520 - putative secretion protein, HylD family, at 66,326 to 67,732
_78p00520
PGA1_78p00530: PGA1_78p00530 - putative outer membrane protein, at 67,736 to 68,488
_78p00530
PGA1_78p00540: PGA1_78p00540 - hypothetical protein, at 68,689 to 69,441
_78p00540
PGA1_78p00550: PGA1_78p00550 - putative transcriptional regulator, ArsR family, at 69,560 to 69,922
_78p00550
PGA1_78p00560: PGA1_78p00560 - Uncharacterized conserved protein, at 69,919 to 70,332
_78p00560
PGA1_78p00570: PGA1_78p00570 - hypothetical protein, at 70,393 to 71,322
_78p00570
Position (kb)
68
69
70 Strain fitness (log2 ratio)
-1
0
1
2 at 67.695 kb on + strand at 67.743 kb on + strand at 67.753 kb on + strand at 67.753 kb on + strand at 67.761 kb on - strand at 68.674 kb on - strand at 68.728 kb on + strand at 68.864 kb on + strand, within PGA1_78p00540 at 68.867 kb on - strand, within PGA1_78p00540 at 68.878 kb on - strand, within PGA1_78p00540 at 68.929 kb on - strand, within PGA1_78p00540 at 69.046 kb on + strand, within PGA1_78p00540 at 69.111 kb on - strand, within PGA1_78p00540 at 69.213 kb on + strand, within PGA1_78p00540 at 69.969 kb on - strand, within PGA1_78p00560 at 69.977 kb on + strand, within PGA1_78p00560 at 69.980 kb on - strand, within PGA1_78p00560 at 69.985 kb on - strand, within PGA1_78p00560 at 70.023 kb on + strand, within PGA1_78p00560 at 70.113 kb on + strand, within PGA1_78p00560
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 67,695 + +1.5 67,743 + +0.8 67,753 + -0.5 67,753 + +0.8 67,761 - +1.1 68,674 - -0.7 68,728 + -0.7 68,864 + PGA1_78p00540 0.23 +0.3 68,867 - PGA1_78p00540 0.24 +0.0 68,878 - PGA1_78p00540 0.25 -1.4 68,929 - PGA1_78p00540 0.32 +1.0 69,046 + PGA1_78p00540 0.47 +0.6 69,111 - PGA1_78p00540 0.56 +2.1 69,213 + PGA1_78p00540 0.70 +1.5 69,969 - PGA1_78p00560 0.12 +0.8 69,977 + PGA1_78p00560 0.14 +0.4 69,980 - PGA1_78p00560 0.15 +0.1 69,985 - PGA1_78p00560 0.16 -0.9 70,023 + PGA1_78p00560 0.25 +0.0 70,113 + PGA1_78p00560 0.47 +0.8
Or see this region's nucleotide sequence