Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00080 and PGA1_78p00090 are separated by 36 nucleotides PGA1_78p00090 and PGA1_78p00100 are separated by 148 nucleotides PGA1_78p00100 and PGA1_78p00110 are separated by 96 nucleotides
PGA1_78p00080: PGA1_78p00080 - Predicted transmembrane transcriptional regulator (anti-sigma factor), at 9,075 to 9,917
_78p00080
PGA1_78p00090: PGA1_78p00090 - putative HTH-type transcriptional regulator, at 9,954 to 10,403
_78p00090
PGA1_78p00100: PGA1_78p00100 - flavohemoprotein Hmp, at 10,552 to 11,742
_78p00100
PGA1_78p00110: PGA1_78p00110 - putative transporter, MFS family, at 11,839 to 13,056
_78p00110
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 10.252 kb on + strand, within PGA1_78p00090 at 10.542 kb on + strand at 10.547 kb on + strand at 10.749 kb on - strand, within PGA1_78p00100 at 10.893 kb on - strand, within PGA1_78p00100 at 10.934 kb on - strand, within PGA1_78p00100 at 11.230 kb on - strand, within PGA1_78p00100 at 11.250 kb on - strand, within PGA1_78p00100 at 11.287 kb on + strand, within PGA1_78p00100 at 11.295 kb on - strand, within PGA1_78p00100 at 11.603 kb on - strand, within PGA1_78p00100 at 11.864 kb on + strand at 12.020 kb on + strand, within PGA1_78p00110 at 12.047 kb on - strand, within PGA1_78p00110 at 12.159 kb on + strand, within PGA1_78p00110 at 12.287 kb on - strand, within PGA1_78p00110 at 12.402 kb on + strand, within PGA1_78p00110 at 12.459 kb on - strand, within PGA1_78p00110 at 12.511 kb on + strand, within PGA1_78p00110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 10,252 + PGA1_78p00090 0.66 -1.0 10,542 + +0.1 10,547 + -0.3 10,749 - PGA1_78p00100 0.17 +0.6 10,893 - PGA1_78p00100 0.29 -0.7 10,934 - PGA1_78p00100 0.32 -0.0 11,230 - PGA1_78p00100 0.57 +0.2 11,250 - PGA1_78p00100 0.59 -1.9 11,287 + PGA1_78p00100 0.62 +0.4 11,295 - PGA1_78p00100 0.62 -0.5 11,603 - PGA1_78p00100 0.88 -1.1 11,864 + -0.4 12,020 + PGA1_78p00110 0.15 +1.8 12,047 - PGA1_78p00110 0.17 +0.8 12,159 + PGA1_78p00110 0.26 -0.5 12,287 - PGA1_78p00110 0.37 +0.5 12,402 + PGA1_78p00110 0.46 -0.1 12,459 - PGA1_78p00110 0.51 -0.1 12,511 + PGA1_78p00110 0.55 -0.9
Or see this region's nucleotide sequence