Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03910 and PGA1_c03920 are separated by 95 nucleotides PGA1_c03920 and PGA1_c03930 are separated by 1 nucleotides PGA1_c03930 and PGA1_c03940 are separated by 234 nucleotides
PGA1_c03910: PGA1_c03910 - short chain dehydrogenase / reductase, at 377,794 to 378,552
_c03910
PGA1_c03920: PGA1_c03920 - Putative transmembrane protein (Alph_Pro_TM)., at 378,648 to 379,538
_c03920
PGA1_c03930: PGA1_c03930 - Predicted permeases, at 379,540 to 380,463
_c03930
PGA1_c03940: PGA1_c03940 - putative permease protein, at 380,698 to 381,534
_c03940
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 378.626 kb on + strand at 378.644 kb on - strand at 378.725 kb on - strand at 378.773 kb on + strand, within PGA1_c03920 at 378.773 kb on + strand, within PGA1_c03920 at 378.933 kb on - strand, within PGA1_c03920 at 379.089 kb on - strand, within PGA1_c03920 at 379.144 kb on - strand, within PGA1_c03920 at 379.157 kb on + strand, within PGA1_c03920 at 379.237 kb on + strand, within PGA1_c03920 at 379.482 kb on + strand at 379.482 kb on + strand at 379.490 kb on - strand at 379.615 kb on + strand at 379.626 kb on + strand at 379.634 kb on - strand, within PGA1_c03930 at 379.750 kb on + strand, within PGA1_c03930 at 379.826 kb on - strand, within PGA1_c03930 at 379.929 kb on - strand, within PGA1_c03930 at 379.934 kb on - strand, within PGA1_c03930 at 379.963 kb on - strand, within PGA1_c03930 at 380.125 kb on - strand, within PGA1_c03930 at 380.234 kb on - strand, within PGA1_c03930 at 380.468 kb on + strand at 380.468 kb on + strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.476 kb on - strand at 380.614 kb on - strand at 380.638 kb on - strand at 380.665 kb on + strand at 380.665 kb on + strand at 380.716 kb on + strand at 380.716 kb on + strand at 380.729 kb on + strand at 380.777 kb on + strand at 380.783 kb on + strand, within PGA1_c03940 at 380.803 kb on + strand, within PGA1_c03940 at 380.861 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.960 kb on + strand, within PGA1_c03940 at 380.968 kb on - strand, within PGA1_c03940 at 380.980 kb on + strand, within PGA1_c03940 at 381.110 kb on - strand, within PGA1_c03940 at 381.179 kb on + strand, within PGA1_c03940 at 381.183 kb on - strand, within PGA1_c03940 at 381.188 kb on + strand, within PGA1_c03940 at 381.276 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.290 kb on + strand, within PGA1_c03940 at 381.298 kb on - strand, within PGA1_c03940 at 381.314 kb on - strand, within PGA1_c03940 at 381.326 kb on + strand, within PGA1_c03940 at 381.339 kb on - strand, within PGA1_c03940 at 381.352 kb on + strand, within PGA1_c03940 at 381.391 kb on - strand, within PGA1_c03940
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 378,626 + -0.3 378,644 - -0.4 378,725 - -1.7 378,773 + PGA1_c03920 0.14 -1.7 378,773 + PGA1_c03920 0.14 -1.3 378,933 - PGA1_c03920 0.32 -0.3 379,089 - PGA1_c03920 0.49 -1.1 379,144 - PGA1_c03920 0.56 -0.6 379,157 + PGA1_c03920 0.57 -0.7 379,237 + PGA1_c03920 0.66 -2.4 379,482 + -2.2 379,482 + -1.3 379,490 - -0.6 379,615 + -1.4 379,626 + +0.5 379,634 - PGA1_c03930 0.10 -1.2 379,750 + PGA1_c03930 0.23 -3.2 379,826 - PGA1_c03930 0.31 -0.5 379,929 - PGA1_c03930 0.42 -0.9 379,934 - PGA1_c03930 0.43 -0.6 379,963 - PGA1_c03930 0.46 -2.1 380,125 - PGA1_c03930 0.63 +0.4 380,234 - PGA1_c03930 0.75 -0.6 380,468 + -0.7 380,468 + +0.1 380,476 - -0.1 380,476 - +1.4 380,476 - +1.5 380,476 - +0.5 380,476 - +0.2 380,614 - -0.0 380,638 - +0.1 380,665 + +2.2 380,665 + -1.0 380,716 + -0.7 380,716 + -0.5 380,729 + -1.3 380,777 + +0.2 380,783 + PGA1_c03940 0.10 -0.5 380,803 + PGA1_c03940 0.13 +0.4 380,861 + PGA1_c03940 0.19 +0.2 380,960 + PGA1_c03940 0.31 -0.7 380,960 + PGA1_c03940 0.31 -1.0 380,968 - PGA1_c03940 0.32 -0.1 380,980 + PGA1_c03940 0.34 -1.5 381,110 - PGA1_c03940 0.49 -1.9 381,179 + PGA1_c03940 0.57 -1.1 381,183 - PGA1_c03940 0.58 -1.2 381,188 + PGA1_c03940 0.59 -0.0 381,276 + PGA1_c03940 0.69 -1.5 381,290 + PGA1_c03940 0.71 +0.0 381,290 + PGA1_c03940 0.71 +0.7 381,298 - PGA1_c03940 0.72 -0.3 381,314 - PGA1_c03940 0.74 +1.4 381,326 + PGA1_c03940 0.75 -0.2 381,339 - PGA1_c03940 0.77 +0.3 381,352 + PGA1_c03940 0.78 +0.0 381,391 - PGA1_c03940 0.83 -1.0
Or see this region's nucleotide sequence