Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01760 and PGA1_262p01770 are separated by 62 nucleotides PGA1_262p01770 and PGA1_262p01780 are separated by 121 nucleotides
PGA1_262p01760: PGA1_262p01760 - epoxide hydrolase, similar to eukaryotic, at 193,416 to 194,588
_262p01760
PGA1_262p01770: PGA1_262p01770 - putative endoribonuclease, at 194,651 to 194,992
_262p01770
PGA1_262p01780: PGA1_262p01780 - transcriptional regulator, LysR family, at 195,114 to 196,019
_262p01780
Position (kb) 194
195 Strain fitness (log2 ratio) -1
0
1
2 at 193.677 kb on - strand, within PGA1_262p01760 at 193.772 kb on + strand, within PGA1_262p01760 at 193.779 kb on + strand, within PGA1_262p01760 at 193.792 kb on - strand, within PGA1_262p01760 at 193.799 kb on + strand, within PGA1_262p01760 at 193.882 kb on + strand, within PGA1_262p01760 at 193.928 kb on - strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.951 kb on + strand, within PGA1_262p01760 at 193.973 kb on + strand, within PGA1_262p01760 at 193.987 kb on + strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.095 kb on - strand, within PGA1_262p01760 at 194.164 kb on + strand, within PGA1_262p01760 at 194.172 kb on - strand, within PGA1_262p01760 at 194.302 kb on + strand, within PGA1_262p01760 at 194.321 kb on + strand, within PGA1_262p01760 at 194.403 kb on + strand, within PGA1_262p01760 at 194.414 kb on - strand, within PGA1_262p01760 at 194.446 kb on - strand, within PGA1_262p01760 at 194.456 kb on + strand, within PGA1_262p01760 at 194.456 kb on + strand, within PGA1_262p01760 at 194.456 kb on + strand, within PGA1_262p01760 at 194.459 kb on - strand, within PGA1_262p01760 at 194.464 kb on - strand, within PGA1_262p01760 at 194.464 kb on - strand, within PGA1_262p01760 at 194.464 kb on - strand, within PGA1_262p01760 at 194.486 kb on + strand at 194.615 kb on + strand at 194.623 kb on - strand at 194.712 kb on - strand, within PGA1_262p01770 at 194.835 kb on + strand, within PGA1_262p01770 at 194.846 kb on + strand, within PGA1_262p01770 at 194.854 kb on - strand, within PGA1_262p01770 at 194.854 kb on - strand, within PGA1_262p01770 at 194.865 kb on - strand, within PGA1_262p01770 at 194.876 kb on + strand, within PGA1_262p01770 at 194.876 kb on + strand, within PGA1_262p01770 at 194.876 kb on + strand, within PGA1_262p01770 at 194.906 kb on - strand, within PGA1_262p01770 at 194.912 kb on + strand, within PGA1_262p01770 at 194.937 kb on + strand, within PGA1_262p01770 at 194.942 kb on - strand, within PGA1_262p01770 at 194.973 kb on + strand at 195.026 kb on - strand at 195.038 kb on + strand at 195.046 kb on + strand at 195.124 kb on + strand at 195.132 kb on - strand at 195.132 kb on - strand at 195.134 kb on + strand at 195.134 kb on + strand at 195.159 kb on + strand at 195.173 kb on + strand at 195.173 kb on + strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.181 kb on - strand at 195.260 kb on + strand, within PGA1_262p01780 at 195.268 kb on - strand, within PGA1_262p01780 at 195.527 kb on - strand, within PGA1_262p01780 at 195.588 kb on + strand, within PGA1_262p01780 at 195.808 kb on + strand, within PGA1_262p01780 at 195.808 kb on + strand, within PGA1_262p01780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 193,677 - PGA1_262p01760 0.22 -1.3 193,772 + PGA1_262p01760 0.30 -0.1 193,779 + PGA1_262p01760 0.31 +0.1 193,792 - PGA1_262p01760 0.32 -0.2 193,799 + PGA1_262p01760 0.33 -0.6 193,882 + PGA1_262p01760 0.40 +0.4 193,928 - PGA1_262p01760 0.44 -1.0 193,951 + PGA1_262p01760 0.46 +0.9 193,951 + PGA1_262p01760 0.46 +0.3 193,973 + PGA1_262p01760 0.47 +0.4 193,987 + PGA1_262p01760 0.49 -1.1 194,095 - PGA1_262p01760 0.58 +0.5 194,095 - PGA1_262p01760 0.58 +0.5 194,164 + PGA1_262p01760 0.64 +0.2 194,172 - PGA1_262p01760 0.64 +0.1 194,302 + PGA1_262p01760 0.76 -1.1 194,321 + PGA1_262p01760 0.77 -0.1 194,403 + PGA1_262p01760 0.84 +0.4 194,414 - PGA1_262p01760 0.85 +0.8 194,446 - PGA1_262p01760 0.88 +0.0 194,456 + PGA1_262p01760 0.89 +0.6 194,456 + PGA1_262p01760 0.89 +0.2 194,456 + PGA1_262p01760 0.89 +1.7 194,459 - PGA1_262p01760 0.89 +1.6 194,464 - PGA1_262p01760 0.89 -0.6 194,464 - PGA1_262p01760 0.89 +0.4 194,464 - PGA1_262p01760 0.89 -1.2 194,486 + -0.1 194,615 + +0.6 194,623 - -1.3 194,712 - PGA1_262p01770 0.18 +0.7 194,835 + PGA1_262p01770 0.54 +1.3 194,846 + PGA1_262p01770 0.57 -0.6 194,854 - PGA1_262p01770 0.59 -0.2 194,854 - PGA1_262p01770 0.59 +1.8 194,865 - PGA1_262p01770 0.63 -0.3 194,876 + PGA1_262p01770 0.66 +0.2 194,876 + PGA1_262p01770 0.66 +0.6 194,876 + PGA1_262p01770 0.66 -0.2 194,906 - PGA1_262p01770 0.75 -0.1 194,912 + PGA1_262p01770 0.76 -0.5 194,937 + PGA1_262p01770 0.84 +1.0 194,942 - PGA1_262p01770 0.85 +0.9 194,973 + +0.1 195,026 - -0.3 195,038 + -1.0 195,046 + -0.1 195,124 + -1.2 195,132 - +0.3 195,132 - -1.1 195,134 + -0.1 195,134 + +0.1 195,159 + +1.0 195,173 + -0.3 195,173 + +0.2 195,181 - +0.6 195,181 - +0.5 195,181 - -0.2 195,260 + PGA1_262p01780 0.16 +0.6 195,268 - PGA1_262p01780 0.17 -0.3 195,527 - PGA1_262p01780 0.46 +0.1 195,588 + PGA1_262p01780 0.52 +0.4 195,808 + PGA1_262p01780 0.77 -0.4 195,808 + PGA1_262p01780 0.77 -0.2
Or see this region's nucleotide sequence