Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00990 and PGA1_262p01000 are separated by 50 nucleotides PGA1_262p01000 and PGA1_262p01010 overlap by 4 nucleotides PGA1_262p01010 and PGA1_262p01020 are separated by 5 nucleotides
PGA1_262p00990: PGA1_262p00990 - transcriptional regulator, LysR family, at 108,659 to 109,582
_262p00990
PGA1_262p01000: PGA1_262p01000 - dipeptide transport ATP-binding protein DppF, at 109,633 to 110,667
_262p01000
PGA1_262p01010: PGA1_262p01010 - dipeptide transport ATP-binding protein DppD, at 110,664 to 111,656
_262p01010
PGA1_262p01020: PGA1_262p01020 - dipeptide transport system permease protein DppC, at 111,662 to 112,609
_262p01020
Position (kb) 109
110
111 Strain fitness (log2 ratio) -2
-1
0
1
2 at 108.638 kb on - strand at 108.650 kb on - strand at 108.712 kb on - strand at 108.722 kb on - strand at 108.803 kb on + strand, within PGA1_262p00990 at 108.826 kb on - strand, within PGA1_262p00990 at 108.971 kb on + strand, within PGA1_262p00990 at 109.078 kb on + strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.176 kb on - strand, within PGA1_262p00990 at 109.340 kb on + strand, within PGA1_262p00990 at 109.444 kb on + strand, within PGA1_262p00990 at 109.599 kb on - strand at 109.604 kb on - strand at 109.615 kb on + strand at 109.622 kb on - strand at 109.637 kb on - strand at 109.637 kb on - strand at 109.639 kb on - strand at 109.639 kb on - strand at 109.639 kb on - strand at 109.763 kb on + strand, within PGA1_262p01000 at 109.857 kb on - strand, within PGA1_262p01000 at 109.892 kb on + strand, within PGA1_262p01000 at 110.064 kb on - strand, within PGA1_262p01000 at 110.268 kb on + strand, within PGA1_262p01000 at 110.298 kb on + strand, within PGA1_262p01000 at 110.309 kb on + strand, within PGA1_262p01000 at 110.309 kb on + strand, within PGA1_262p01000 at 110.592 kb on - strand at 110.598 kb on - strand at 110.730 kb on - strand at 110.900 kb on + strand, within PGA1_262p01010 at 110.908 kb on + strand, within PGA1_262p01010 at 110.908 kb on + strand, within PGA1_262p01010 at 110.916 kb on - strand, within PGA1_262p01010 at 110.961 kb on - strand, within PGA1_262p01010 at 111.017 kb on + strand, within PGA1_262p01010 at 111.017 kb on + strand, within PGA1_262p01010 at 111.032 kb on + strand, within PGA1_262p01010 at 111.101 kb on + strand, within PGA1_262p01010 at 111.195 kb on - strand, within PGA1_262p01010 at 111.230 kb on - strand, within PGA1_262p01010 at 111.237 kb on + strand, within PGA1_262p01010 at 111.552 kb on + strand, within PGA1_262p01010 at 111.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 108,638 - +0.8 108,650 - -1.2 108,712 - +1.3 108,722 - +0.1 108,803 + PGA1_262p00990 0.16 -0.8 108,826 - PGA1_262p00990 0.18 -0.1 108,971 + PGA1_262p00990 0.34 -0.6 109,078 + PGA1_262p00990 0.45 +0.9 109,086 - PGA1_262p00990 0.46 -1.2 109,086 - PGA1_262p00990 0.46 +0.4 109,086 - PGA1_262p00990 0.46 -1.2 109,086 - PGA1_262p00990 0.46 -1.0 109,176 - PGA1_262p00990 0.56 +0.3 109,340 + PGA1_262p00990 0.74 +0.4 109,444 + PGA1_262p00990 0.85 +0.1 109,599 - -2.2 109,604 - -0.2 109,615 + +0.9 109,622 - -0.8 109,637 - +1.2 109,637 - +0.1 109,639 - -0.3 109,639 - +0.6 109,639 - -0.2 109,763 + PGA1_262p01000 0.13 +1.1 109,857 - PGA1_262p01000 0.22 +0.6 109,892 + PGA1_262p01000 0.25 +0.5 110,064 - PGA1_262p01000 0.42 +0.3 110,268 + PGA1_262p01000 0.61 -0.1 110,298 + PGA1_262p01000 0.64 +0.4 110,309 + PGA1_262p01000 0.65 +0.2 110,309 + PGA1_262p01000 0.65 +1.8 110,592 - +0.4 110,598 - +0.6 110,730 - -2.3 110,900 + PGA1_262p01010 0.24 -0.7 110,908 + PGA1_262p01010 0.25 +0.7 110,908 + PGA1_262p01010 0.25 -0.6 110,916 - PGA1_262p01010 0.25 +0.4 110,961 - PGA1_262p01010 0.30 -1.1 111,017 + PGA1_262p01010 0.36 +0.7 111,017 + PGA1_262p01010 0.36 +0.3 111,032 + PGA1_262p01010 0.37 -1.7 111,101 + PGA1_262p01010 0.44 +0.5 111,195 - PGA1_262p01010 0.53 -0.2 111,230 - PGA1_262p01010 0.57 +0.1 111,237 + PGA1_262p01010 0.58 -0.2 111,552 + PGA1_262p01010 0.89 -1.2 111,659 + -0.1
Or see this region's nucleotide sequence