Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00440 and PGA1_262p00450 overlap by 4 nucleotides PGA1_262p00450 and PGA1_262p00460 are separated by 122 nucleotides PGA1_262p00460 and PGA1_262p00470 are separated by 0 nucleotides PGA1_262p00470 and PGA1_262p00480 overlap by 17 nucleotides
PGA1_262p00440: PGA1_262p00440 - glucose transporter, permease component <small>(from data)</small>, at 52,971 to 54,272
_262p00440
PGA1_262p00450: PGA1_262p00450 - glucose transporter, ATPase component <small>(from data)</small>, at 54,269 to 55,051
_262p00450
PGA1_262p00460: PGA1_262p00460 - transcriptional regulator, MerR family, at 55,174 to 55,602
_262p00460
PGA1_262p00470: PGA1_262p00470 - Plasmid stabilization system protein, at 55,603 to 55,971
_262p00470
PGA1_262p00480: PGA1_262p00480 - putative addiction module antidote protein, CC2985 family, at 55,955 to 56,230
_262p00480
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 53.301 kb on + strand, within PGA1_262p00440 at 53.546 kb on + strand, within PGA1_262p00440 at 53.613 kb on + strand, within PGA1_262p00440 at 53.671 kb on + strand, within PGA1_262p00440 at 53.767 kb on - strand, within PGA1_262p00440 at 53.972 kb on + strand, within PGA1_262p00440 at 53.982 kb on - strand, within PGA1_262p00440 at 54.029 kb on + strand, within PGA1_262p00440 at 54.266 kb on + strand at 54.274 kb on - strand at 54.356 kb on + strand, within PGA1_262p00450 at 54.379 kb on + strand, within PGA1_262p00450 at 54.379 kb on + strand, within PGA1_262p00450 at 54.387 kb on - strand, within PGA1_262p00450 at 54.816 kb on + strand, within PGA1_262p00450 at 54.970 kb on + strand, within PGA1_262p00450 at 55.208 kb on + strand at 55.208 kb on + strand at 55.232 kb on + strand, within PGA1_262p00460 at 55.232 kb on + strand, within PGA1_262p00460 at 55.232 kb on + strand, within PGA1_262p00460 at 55.240 kb on - strand, within PGA1_262p00460 at 55.263 kb on + strand, within PGA1_262p00460 at 55.303 kb on + strand, within PGA1_262p00460 at 55.308 kb on + strand, within PGA1_262p00460 at 55.475 kb on - strand, within PGA1_262p00460 at 55.482 kb on - strand, within PGA1_262p00460 at 55.657 kb on - strand, within PGA1_262p00470 at 55.699 kb on + strand, within PGA1_262p00470 at 55.709 kb on + strand, within PGA1_262p00470 at 55.802 kb on - strand, within PGA1_262p00470 at 55.851 kb on - strand, within PGA1_262p00470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 53,301 + PGA1_262p00440 0.25 +0.4 53,546 + PGA1_262p00440 0.44 -0.5 53,613 + PGA1_262p00440 0.49 +0.0 53,671 + PGA1_262p00440 0.54 +0.5 53,767 - PGA1_262p00440 0.61 -0.4 53,972 + PGA1_262p00440 0.77 +0.9 53,982 - PGA1_262p00440 0.78 -0.7 54,029 + PGA1_262p00440 0.81 +0.0 54,266 + +0.6 54,274 - +0.5 54,356 + PGA1_262p00450 0.11 -0.3 54,379 + PGA1_262p00450 0.14 +1.7 54,379 + PGA1_262p00450 0.14 -0.7 54,387 - PGA1_262p00450 0.15 +1.1 54,816 + PGA1_262p00450 0.70 +0.0 54,970 + PGA1_262p00450 0.90 +1.8 55,208 + -0.1 55,208 + +0.3 55,232 + PGA1_262p00460 0.14 +0.5 55,232 + PGA1_262p00460 0.14 -0.1 55,232 + PGA1_262p00460 0.14 -0.2 55,240 - PGA1_262p00460 0.15 -0.2 55,263 + PGA1_262p00460 0.21 -1.2 55,303 + PGA1_262p00460 0.30 -3.0 55,308 + PGA1_262p00460 0.31 +0.9 55,475 - PGA1_262p00460 0.70 -0.1 55,482 - PGA1_262p00460 0.72 -0.4 55,657 - PGA1_262p00470 0.15 -0.0 55,699 + PGA1_262p00470 0.26 +0.2 55,709 + PGA1_262p00470 0.29 +0.1 55,802 - PGA1_262p00470 0.54 -2.2 55,851 - PGA1_262p00470 0.67 +0.3
Or see this region's nucleotide sequence