Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34650

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34640 and PGA1_c34650 overlap by 1 nucleotidesPGA1_c34650 and PGA1_c34660 are separated by 200 nucleotides PGA1_c34640: PGA1_c34640 - transcription elongation protein NusA, at 3,635,663 to 3,637,288 _c34640 PGA1_c34650: PGA1_c34650 - UPF0090 protein YhbC, at 3,637,288 to 3,637,878 _c34650 PGA1_c34660: PGA1_c34660 - putative extracellular solute-binding protein, at 3,638,079 to 3,638,924 _c34660 Position (kb) 3637 3638Strain fitness (log2 ratio) -1 0 1at 3637.359 kb on - strand, within PGA1_c34650at 3637.387 kb on - strand, within PGA1_c34650at 3638.031 kb on - strandat 3638.042 kb on - strandat 3638.050 kb on + strandat 3638.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml
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3,637,359 - PGA1_c34650 0.12 -1.0
3,637,387 - PGA1_c34650 0.17 +0.7
3,638,031 - +0.3
3,638,042 - -1.5
3,638,050 + -0.3
3,638,055 + -0.8

Or see this region's nucleotide sequence