Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31810

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.002 mg/ml
3,324,754	+				+0.0
3,324,762	-				-0.1
3,324,762	-				+1.7
3,324,766	+				-0.1
3,324,847	+		PGA1_c31800	0.19	-0.4
3,324,847	+		PGA1_c31800	0.19	-2.4
3,324,855	-		PGA1_c31800	0.20	-0.3
3,324,862	+		PGA1_c31800	0.21	-0.5
3,324,865	-		PGA1_c31800	0.21	-0.5
3,324,930	-		PGA1_c31800	0.30	+0.8
3,324,930	-		PGA1_c31800	0.30	+0.7
3,324,977	+		PGA1_c31800	0.36	+0.2
3,324,977	+		PGA1_c31800	0.36	+0.8
3,324,985	-		PGA1_c31800	0.37	-2.6
3,324,985	-		PGA1_c31800	0.37	+0.3
3,324,985	-		PGA1_c31800	0.37	-0.8
3,325,034	+		PGA1_c31800	0.44	-1.1
3,325,034	+		PGA1_c31800	0.44	-0.1
3,325,037	-		PGA1_c31800	0.44	-0.2
3,325,039	+		PGA1_c31800	0.44	+0.5
3,325,135	-		PGA1_c31800	0.57	-1.0
3,325,142	+		PGA1_c31800	0.58	-0.5
3,325,183	+		PGA1_c31800	0.63	+0.1
3,325,223	-		PGA1_c31800	0.69	+0.7
3,325,241	-		PGA1_c31800	0.71	-0.7
3,325,241	-		PGA1_c31800	0.71	-1.2
3,325,282	+		PGA1_c31800	0.76	+0.0
3,325,290	-		PGA1_c31800	0.78	-0.7
3,325,293	+		PGA1_c31800	0.78	+0.6
3,325,293	+		PGA1_c31800	0.78	+0.3
3,325,301	+		PGA1_c31800	0.79	-0.2
3,325,301	+		PGA1_c31800	0.79	-1.3
3,325,301	-		PGA1_c31800	0.79	-0.6
3,325,301	-		PGA1_c31800	0.79	+0.6
3,325,301	-		PGA1_c31800	0.79	-1.6
3,325,342	+		PGA1_c31800	0.84	-0.2
3,325,368	+		PGA1_c31800	0.88	+0.1
3,325,376	-		PGA1_c31800	0.89	-1.2
3,325,376	-		PGA1_c31800	0.89	-0.2
3,325,376	-		PGA1_c31800	0.89	+1.6
3,325,381	-		PGA1_c31800	0.90	+0.2
3,325,381	-		PGA1_c31800	0.90	+0.7
3,325,411	+				+0.4
3,325,470	+				+0.1
3,325,478	-				-0.4
3,325,507	-				+1.6
3,325,523	+				-0.4
3,325,531	-				+0.2
3,325,541	+				+0.3
3,325,557	+				+0.1
3,325,557	+				+0.5
3,325,565	-				-0.6
3,325,580	-				+0.7
3,325,582	+				-0.0
3,325,590	-				+0.9
3,325,794	+		PGA1_c31810	0.12	+1.8
3,325,802	-		PGA1_c31810	0.13	+0.5
3,325,837	+				-0.9
3,325,881	+		PGA1_c31810	0.29	-0.7
3,325,889	-		PGA1_c31810	0.31	+0.2
3,325,889	-		PGA1_c31810	0.31	-0.2
3,325,946	-		PGA1_c31810	0.42	+0.2
3,325,948	+		PGA1_c31810	0.43	+0.6
3,325,950	+		PGA1_c31810	0.43	+0.1
3,325,951	-		PGA1_c31810	0.43	+0.4
3,325,958	-		PGA1_c31810	0.45	+1.2
3,325,958	-		PGA1_c31810	0.45	+0.9
3,325,958	-		PGA1_c31810	0.45	+0.8
3,325,981	+		PGA1_c31810	0.49	-0.8
3,325,998	+		PGA1_c31810	0.53	+0.5
3,325,998	+		PGA1_c31810	0.53	-0.0
3,325,998	+		PGA1_c31810	0.53	+0.6
3,326,006	-		PGA1_c31810	0.54	+1.1
3,326,006	-		PGA1_c31810	0.54	-0.4
3,326,006	-		PGA1_c31810	0.54	-0.3
3,326,011	-		PGA1_c31810	0.55	+0.5
3,326,054	+		PGA1_c31810	0.64	+0.4
3,326,054	+		PGA1_c31810	0.64	-0.3
3,326,072	+		PGA1_c31810	0.68	-0.8
3,326,132	+		PGA1_c31810	0.80	+0.7
3,326,140	-		PGA1_c31810	0.81	+0.5
3,326,141	-		PGA1_c31810	0.82	+0.4
3,326,202	-				+0.4
3,326,202	-				+1.1
3,326,202	-				-0.1
3,326,306	+				-1.6
3,326,390	-				-0.1
3,326,390	-				-0.3
3,326,476	+				+1.7
3,326,476	+				-0.9
3,326,484	-				-0.1
3,326,484	-				-0.2
3,326,484	-				+0.5
3,326,484	-				+0.6
3,326,484	-				-1.6
3,326,484	-				+0.7
3,326,484	-				+0.4
3,326,484	-				+0.3
3,326,484	-				+0.4
3,326,545	+		PGA1_c31820	0.13	+0.8
3,326,545	+		PGA1_c31820	0.13	+0.0
3,326,545	+		PGA1_c31820	0.13	+0.1
3,326,553	-		PGA1_c31820	0.13	+1.1
3,326,553	-		PGA1_c31820	0.13	+0.5
3,326,553	-		PGA1_c31820	0.13	-0.0
3,326,553	-		PGA1_c31820	0.13	-0.5
3,326,563	-		PGA1_c31820	0.14	-1.8
3,326,587	+		PGA1_c31820	0.17	+0.7
3,326,587	+		PGA1_c31820	0.17	-0.8
3,326,595	-		PGA1_c31820	0.18	+0.7
3,326,614	+		PGA1_c31820	0.20	+0.3
3,326,660	+		PGA1_c31820	0.24	-1.7
3,326,660	+		PGA1_c31820	0.24	-0.8
3,326,663	-		PGA1_c31820	0.24	+0.2
3,326,685	+		PGA1_c31820	0.27	-0.5
3,326,693	+		PGA1_c31820	0.27	+0.2
3,326,730	+		PGA1_c31820	0.31	+0.0
3,326,820	-		PGA1_c31820	0.40	-0.2
3,326,820	-		PGA1_c31820	0.40	-2.0
3,326,841	-		PGA1_c31820	0.42	+0.9
3,326,867	+		PGA1_c31820	0.45	-0.1
3,326,873	+		PGA1_c31820	0.45	-1.2
3,326,874	-		PGA1_c31820	0.45	-0.2
3,326,892	+		PGA1_c31820	0.47	-0.9
3,326,919	-		PGA1_c31820	0.50	+0.4
3,326,939	+		PGA1_c31820	0.52	+0.7
3,326,966	+		PGA1_c31820	0.54	+0.0
3,326,971	+		PGA1_c31820	0.55	+0.0
3,327,021	+		PGA1_c31820	0.60	-0.8
3,327,031	-		PGA1_c31820	0.61	+1.0
3,327,041	+		PGA1_c31820	0.62	-0.0
3,327,049	-		PGA1_c31820	0.63	-0.6
3,327,049	-		PGA1_c31820	0.63	+0.7
3,327,054	-		PGA1_c31820	0.63	+0.6
3,327,101	+		PGA1_c31820	0.68	-1.1
3,327,101	+		PGA1_c31820	0.68	-1.3
3,327,101	+		PGA1_c31820	0.68	-0.3
3,327,223	+		PGA1_c31820	0.80	-0.7
3,327,223	+		PGA1_c31820	0.80	+0.1
3,327,226	-		PGA1_c31820	0.80	+0.3
3,327,226	-		PGA1_c31820	0.80	-0.4
3,327,226	-		PGA1_c31820	0.80	+1.7