Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29780

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.002 mg/ml
3,113,721	+		PGA1_c29770	0.58	+0.6
3,113,727	+		PGA1_c29770	0.59	+1.1
3,113,729	-		PGA1_c29770	0.59	+1.0
3,113,744	-		PGA1_c29770	0.60	+1.4
3,113,776	-		PGA1_c29770	0.62	+0.8
3,113,812	+		PGA1_c29770	0.65	-0.5
3,113,820	-		PGA1_c29770	0.65	+0.0
3,113,820	-		PGA1_c29770	0.65	+0.6
3,113,820	-		PGA1_c29770	0.65	-0.1
3,113,820	-		PGA1_c29770	0.65	+0.2
3,113,890	+		PGA1_c29770	0.71	-0.8
3,113,935	-		PGA1_c29770	0.74	+1.2
3,113,952	+		PGA1_c29770	0.75	+0.3
3,113,960	-		PGA1_c29770	0.76	+0.3
3,113,960	-		PGA1_c29770	0.76	-0.4
3,113,987	-		PGA1_c29770	0.78	-0.6
3,113,987	-		PGA1_c29770	0.78	+0.6
3,114,033	-		PGA1_c29770	0.81	-0.3
3,114,033	-		PGA1_c29770	0.81	+0.5
3,114,033	-		PGA1_c29770	0.81	+0.8
3,114,040	+		PGA1_c29770	0.82	+0.1
3,114,053	-		PGA1_c29770	0.83	+0.1
3,114,080	+		PGA1_c29770	0.85	-0.2
3,114,115	-		PGA1_c29770	0.87	+0.2
3,114,115	-		PGA1_c29770	0.87	-0.0
3,114,128	+		PGA1_c29770	0.88	+1.0
3,114,128	-		PGA1_c29770	0.88	-1.3
3,114,136	-		PGA1_c29770	0.89	+0.6
3,114,152	-		PGA1_c29770	0.90	+0.0
3,114,243	+				-0.2
3,114,243	+				+1.0
3,114,243	+				-1.5
3,114,264	+				-0.6
3,114,264	+				-0.4
3,114,264	+				+0.4
3,114,297	+				+0.9
3,114,358	+				+0.1
3,114,358	+				+0.5
3,114,365	+				-0.5
3,114,365	+				-0.7
3,114,365	+				+0.5
3,114,366	-				+0.5
3,114,373	-				-0.5
3,114,386	-				-0.2
3,114,523	+				+0.0
3,114,523	+				-0.3
3,114,523	+				+0.4
3,114,525	+				-1.5
3,114,531	-				+1.0
3,114,534	+				-0.3
3,114,588	-				+0.7
3,114,590	+				-0.5
3,114,590	+				+0.4
3,114,598	-				+0.5
3,114,598	-				+0.6
3,114,716	-				+1.0
3,114,716	-				+0.5
3,114,738	-		PGA1_c29780	0.10	+0.2
3,114,801	+		PGA1_c29780	0.15	+0.2
3,114,837	+		PGA1_c29780	0.17	+0.0
3,114,946	+		PGA1_c29780	0.25	+0.2
3,114,946	+		PGA1_c29780	0.25	+1.1
3,114,948	+		PGA1_c29780	0.25	-0.1
3,114,949	-		PGA1_c29780	0.25	+1.2
3,114,949	-		PGA1_c29780	0.25	+1.0
3,114,954	-		PGA1_c29780	0.25	+0.5
3,114,971	-		PGA1_c29780	0.27	-0.3
3,114,985	+		PGA1_c29780	0.28	+1.5
3,115,038	+		PGA1_c29780	0.31	+0.8
3,115,038	+		PGA1_c29780	0.31	+1.3
3,115,065	+		PGA1_c29780	0.33	+0.0
3,115,071	+		PGA1_c29780	0.34	+0.6
3,115,152	-		PGA1_c29780	0.40	+0.2
3,115,187	+		PGA1_c29780	0.42	+0.5
3,115,256	+		PGA1_c29780	0.47	+0.9
3,115,256	-		PGA1_c29780	0.47	+0.5
3,115,371	-		PGA1_c29780	0.55	+0.7
3,115,371	-		PGA1_c29780	0.55	-1.6
3,115,460	+		PGA1_c29780	0.62	-0.9
3,115,460	+		PGA1_c29780	0.62	-0.3
3,115,534	-		PGA1_c29780	0.67	+1.0
3,115,598	-		PGA1_c29780	0.71	+0.5
3,115,744	-		PGA1_c29780	0.82	+0.1
3,115,744	-		PGA1_c29780	0.82	+1.6
3,115,780	+		PGA1_c29780	0.84	+0.8
3,115,852	+		PGA1_c29780	0.89	-0.2
3,115,891	-				-0.4
3,115,916	+				-0.1
3,115,923	-				-0.4
3,115,945	+				+0.0
3,115,993	+				-0.5
3,115,993	+				-1.3
3,115,993	+				-0.4
3,115,993	+				-1.0
3,115,993	+				+0.4
3,115,995	+				+0.3
3,116,001	-				-1.6
3,116,001	-				-0.8
3,116,001	-				-0.6
3,116,067	-				+0.8
3,116,085	+		PGA1_c29790	0.12	+0.4
3,116,306	-		PGA1_c29790	0.49	-1.3
3,116,474	-		PGA1_c29790	0.76	-0.2
3,116,543	+		PGA1_c29790	0.88	-0.5
3,116,543	+		PGA1_c29790	0.88	+0.2
3,116,551	-		PGA1_c29790	0.89	-1.1
3,116,592	-				-2.1
3,116,619	-				+1.1
3,116,633	+				-0.1
3,116,659	+				-0.4
3,116,756	-				+0.3
3,116,774	-		PGA1_c29800	0.10	+1.0
3,116,791	+		PGA1_c29800	0.12	-1.0
3,116,791	+		PGA1_c29800	0.12	-0.4
3,116,791	+		PGA1_c29800	0.12	+0.3
3,116,799	-		PGA1_c29800	0.13	+1.9
3,116,799	-		PGA1_c29800	0.13	-0.1
3,116,799	-		PGA1_c29800	0.13	+0.5
3,116,799	-		PGA1_c29800	0.13	+0.0
3,116,830	+		PGA1_c29800	0.16	-0.9
3,116,871	-		PGA1_c29800	0.20	-0.5
3,116,891	+		PGA1_c29800	0.22	+1.3
3,116,899	+		PGA1_c29800	0.23	-0.4
3,116,909	+		PGA1_c29800	0.24	+0.4
3,116,909	+		PGA1_c29800	0.24	-0.1
3,116,909	+		PGA1_c29800	0.24	-1.2
3,116,909	+		PGA1_c29800	0.24	-0.1
3,116,909	-		PGA1_c29800	0.24	-1.6
3,116,917	-		PGA1_c29800	0.24	+0.3
3,116,917	-		PGA1_c29800	0.24	-0.0
3,116,966	-		PGA1_c29800	0.29	-0.3
3,116,971	-		PGA1_c29800	0.30	-0.2
3,116,981	-		PGA1_c29800	0.31	+0.3
3,116,989	+		PGA1_c29800	0.32	+1.3