Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c28850

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.002 mg/ml
3,024,480	+		PGA1_c28840	0.18	+0.9
3,024,520	-		PGA1_c28840	0.21	+0.6
3,024,607	+		PGA1_c28840	0.29	-0.1
3,024,634	+		PGA1_c28840	0.31	+0.2
3,024,641	-		PGA1_c28840	0.32	+0.2
3,024,670	-		PGA1_c28840	0.34	-1.8
3,024,670	-		PGA1_c28840	0.34	-1.2
3,024,732	-		PGA1_c28840	0.40	+0.3
3,024,732	-		PGA1_c28840	0.40	+1.2
3,024,767	+		PGA1_c28840	0.43	-1.0
3,024,767	+		PGA1_c28840	0.43	+0.3
3,024,767	+		PGA1_c28840	0.43	-1.1
3,024,767	+		PGA1_c28840	0.43	-1.5
3,024,775	-		PGA1_c28840	0.43	+0.7
3,024,775	-		PGA1_c28840	0.43	-0.3
3,024,775	-		PGA1_c28840	0.43	-1.6
3,024,775	-		PGA1_c28840	0.43	-0.2
3,024,803	+		PGA1_c28840	0.46	+0.5
3,024,803	+		PGA1_c28840	0.46	+1.5
3,024,803	+		PGA1_c28840	0.46	-0.7
3,024,803	+		PGA1_c28840	0.46	+1.4
3,024,803	+		PGA1_c28840	0.46	+0.3
3,024,803	+		PGA1_c28840	0.46	-0.8
3,024,811	-		PGA1_c28840	0.46	+1.4
3,024,854	+		PGA1_c28840	0.50	-0.3
3,024,915	+		PGA1_c28840	0.55	+0.7
3,024,923	-		PGA1_c28840	0.56	+1.1
3,024,933	+		PGA1_c28840	0.57	-1.1
3,024,956	-		PGA1_c28840	0.59	+1.2
3,025,010	-		PGA1_c28840	0.63	+0.4
3,025,020	+		PGA1_c28840	0.64	+1.7
3,025,026	+		PGA1_c28840	0.65	-0.2
3,025,069	+		PGA1_c28840	0.69	-0.1
3,025,167	-		PGA1_c28840	0.77	-1.9
3,025,167	-		PGA1_c28840	0.77	-0.1
3,025,167	-		PGA1_c28840	0.77	+0.4
3,025,269	-		PGA1_c28840	0.86	+0.1
3,025,276	+		PGA1_c28840	0.86	+0.8
3,025,348	+				+0.1
3,025,348	+				-1.3
3,025,348	+				+0.6
3,025,348	+				-0.9
3,025,348	+				-0.3
3,025,348	+				-0.5
3,025,348	+				+0.2
3,025,348	+				-0.3
3,025,348	+				+0.3
3,025,348	+				+1.1
3,025,348	+				-1.0
3,025,356	-				-0.0
3,025,356	-				+0.1
3,025,356	-				+0.2
3,025,356	-				-0.2
3,025,356	-				-0.1
3,025,356	-				+0.0
3,025,356	-				-0.2
3,025,356	-				-0.2
3,025,356	-				+0.4
3,025,464	+				-0.7
3,025,469	+				-0.7
3,025,474	+				-0.4
3,025,477	-				-0.3
3,025,494	-				-0.7
3,025,653	+		PGA1_c28850	0.21	+0.1
3,025,653	+		PGA1_c28850	0.21	+0.5
3,025,653	+		PGA1_c28850	0.21	-0.2
3,025,666	-		PGA1_c28850	0.23	+1.3
3,025,666	-		PGA1_c28850	0.23	-0.2
3,025,720	+		PGA1_c28850	0.29	-0.5
3,025,749	-		PGA1_c28850	0.33	-0.1
3,025,759	+		PGA1_c28850	0.34	+0.2
3,025,764	+		PGA1_c28850	0.34	-0.1
3,025,767	-		PGA1_c28850	0.35	+0.3
3,025,772	-		PGA1_c28850	0.35	+0.1
3,025,772	-		PGA1_c28850	0.35	+0.3
3,025,772	-		PGA1_c28850	0.35	-0.5
3,025,970	+		PGA1_c28850	0.59	+0.1
3,025,978	-		PGA1_c28850	0.60	-0.9
3,025,978	-		PGA1_c28850	0.60	-0.2
3,025,978	-		PGA1_c28850	0.60	+0.1
3,025,978	-		PGA1_c28850	0.60	-0.4
3,025,978	-		PGA1_c28850	0.60	-0.2
3,026,034	+		PGA1_c28850	0.66	+0.3
3,026,034	+		PGA1_c28850	0.66	+0.6
3,026,092	+		PGA1_c28850	0.73	+0.2
3,026,092	+		PGA1_c28850	0.73	-0.4
3,026,092	+		PGA1_c28850	0.73	+1.0
3,026,092	+		PGA1_c28850	0.73	+0.4
3,026,092	+		PGA1_c28850	0.73	-0.7
3,026,092	+		PGA1_c28850	0.73	-1.2
3,026,092	+		PGA1_c28850	0.73	+0.4
3,026,092	+		PGA1_c28850	0.73	-1.7
3,026,092	+		PGA1_c28850	0.73	+0.9
3,026,092	+		PGA1_c28850	0.73	-1.2
3,026,098	-		PGA1_c28850	0.74	-0.0
3,026,099	+		PGA1_c28850	0.74	-0.3
3,026,100	-		PGA1_c28850	0.74	-0.4
3,026,100	-		PGA1_c28850	0.74	+0.1
3,026,100	-		PGA1_c28850	0.74	+0.6
3,026,100	-		PGA1_c28850	0.74	+0.3
3,026,100	-		PGA1_c28850	0.74	-0.8
3,026,100	-		PGA1_c28850	0.74	+0.3
3,026,100	-		PGA1_c28850	0.74	-1.2
3,026,100	-		PGA1_c28850	0.74	-1.2
3,026,100	-		PGA1_c28850	0.74	+1.3
3,026,100	-		PGA1_c28850	0.74	-0.5
3,026,100	-		PGA1_c28850	0.74	-0.1
3,026,100	-		PGA1_c28850	0.74	-0.5
3,026,100	-		PGA1_c28850	0.74	-0.3
3,026,100	-		PGA1_c28850	0.74	+1.1
3,026,110	+		PGA1_c28850	0.75	+0.4
3,026,138	-		PGA1_c28850	0.78	-1.2
3,026,138	-		PGA1_c28850	0.78	-0.1
3,026,223	-		PGA1_c28850	0.88	-0.4
3,026,240	+				+0.2
3,026,240	+				-0.0
3,026,240	+				+0.0
3,026,290	+				+0.4
3,026,373	-				+0.3
3,026,400	-				+0.8
3,026,415	-				-0.2
3,026,431	+				-0.8
3,026,431	+				+0.1
3,026,446	-				+0.0
3,026,515	+		PGA1_c28860	0.14	-0.0
3,026,530	+		PGA1_c28860	0.16	+0.4
3,026,530	+		PGA1_c28860	0.16	+0.3
3,026,530	+		PGA1_c28860	0.16	-0.9
3,026,538	-		PGA1_c28860	0.16	-0.1
3,026,589	-		PGA1_c28860	0.21	+0.5
3,026,612	-		PGA1_c28860	0.23	-0.2
3,026,642	-		PGA1_c28860	0.25	+0.5
3,026,682	-		PGA1_c28860	0.29	-1.0
3,026,696	-		PGA1_c28860	0.30	+0.5
3,026,789	+		PGA1_c28860	0.38	+0.1
3,026,810	+		PGA1_c28860	0.40	+0.1
3,026,818	-		PGA1_c28860	0.41	-0.3
3,026,822	+		PGA1_c28860	0.41	-0.5
3,026,823	-		PGA1_c28860	0.41	-0.4
3,026,870	-		PGA1_c28860	0.46	+0.0
3,026,931	+		PGA1_c28860	0.51	+0.4
3,026,932	-		PGA1_c28860	0.51	-0.3
3,026,939	-		PGA1_c28860	0.52	+0.7
3,026,939	-		PGA1_c28860	0.52	-1.1
3,026,984	-		PGA1_c28860	0.56	-0.7
3,026,984	-		PGA1_c28860	0.56	-0.2
3,026,993	+		PGA1_c28860	0.56	-0.0
3,026,995	+		PGA1_c28860	0.57	+1.0
3,027,001	-		PGA1_c28860	0.57	-0.1
3,027,003	-		PGA1_c28860	0.57	-0.0
3,027,016	-		PGA1_c28860	0.58	+0.1
3,027,066	-		PGA1_c28860	0.63	-0.2
3,027,170	-		PGA1_c28860	0.72	+0.2
3,027,177	-		PGA1_c28860	0.73	+0.3
3,027,239	+		PGA1_c28860	0.78	-1.3
3,027,259	+		PGA1_c28860	0.80	+0.3
3,027,262	-		PGA1_c28860	0.80	+1.1