Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27200

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c27190 and PGA1_c27200 are separated by 93 nucleotidesPGA1_c27200 and PGA1_c27210 are separated by 175 nucleotidesPGA1_c27210 and PGA1_c27220 overlap by 4 nucleotides PGA1_c27190: PGA1_c27190 - aldehyde dehydrogenase, at 2,832,951 to 2,834,333 _c27190 PGA1_c27200: PGA1_c27200 - alcohol dehydrogenase, iron containing, at 2,834,427 to 2,835,572 _c27200 PGA1_c27210: PGA1_c27210 - metal dependent phosphohydrolases-like protein, at 2,835,748 to 2,836,365 _c27210 PGA1_c27220: PGA1_c27220 - putative gamma-butyrobetaine dioxygenase, at 2,836,362 to 2,837,507 _c27220 Position (kb) 2834 2835 2836Strain fitness (log2 ratio) -1 0 1at 2835.525 kb on + strandat 2835.625 kb on + strandat 2835.625 kb on + strandat 2835.667 kb on + strandat 2835.667 kb on + strandat 2835.675 kb on - strandat 2835.675 kb on - strandat 2835.677 kb on + strandat 2835.685 kb on - strandat 2835.685 kb on - strandat 2835.685 kb on - strandat 2835.694 kb on + strandat 2835.702 kb on + strandat 2835.718 kb on + strandat 2835.755 kb on + strandat 2835.755 kb on + strandat 2835.755 kb on + strandat 2835.755 kb on + strandat 2835.763 kb on - strandat 2835.763 kb on - strandat 2835.763 kb on - strandat 2835.827 kb on + strand, within PGA1_c27210at 2835.835 kb on - strand, within PGA1_c27210at 2835.840 kb on + strand, within PGA1_c27210at 2835.840 kb on + strand, within PGA1_c27210at 2835.840 kb on + strand, within PGA1_c27210at 2835.848 kb on - strand, within PGA1_c27210at 2835.930 kb on + strand, within PGA1_c27210at 2835.938 kb on - strand, within PGA1_c27210at 2836.147 kb on + strand, within PGA1_c27210at 2836.163 kb on + strand, within PGA1_c27210at 2836.255 kb on - strand, within PGA1_c27210at 2836.276 kb on + strand, within PGA1_c27210at 2836.386 kb on - strandat 2836.406 kb on + strandat 2836.411 kb on + strandat 2836.440 kb on + strandat 2836.463 kb on + strandat 2836.463 kb on + strandat 2836.481 kb on - strand, within PGA1_c27220at 2836.490 kb on + strand, within PGA1_c27220at 2836.515 kb on + strand, within PGA1_c27220at 2836.516 kb on - strand, within PGA1_c27220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml
remove
2,835,525 + -0.5
2,835,625 + +0.2
2,835,625 + +0.8
2,835,667 + -0.1
2,835,667 + +0.1
2,835,675 - +0.2
2,835,675 - -1.0
2,835,677 + +0.2
2,835,685 - +0.0
2,835,685 - +0.4
2,835,685 - -0.6
2,835,694 + -0.2
2,835,702 + -1.3
2,835,718 + +0.2
2,835,755 + +0.1
2,835,755 + -0.6
2,835,755 + +0.6
2,835,755 + -0.8
2,835,763 - -0.8
2,835,763 - -0.2
2,835,763 - +0.9
2,835,827 + PGA1_c27210 0.13 -0.4
2,835,835 - PGA1_c27210 0.14 -0.3
2,835,840 + PGA1_c27210 0.15 +0.5
2,835,840 + PGA1_c27210 0.15 +0.4
2,835,840 + PGA1_c27210 0.15 -1.0
2,835,848 - PGA1_c27210 0.16 +0.7
2,835,930 + PGA1_c27210 0.29 -0.9
2,835,938 - PGA1_c27210 0.31 +0.5
2,836,147 + PGA1_c27210 0.65 -0.2
2,836,163 + PGA1_c27210 0.67 +0.2
2,836,255 - PGA1_c27210 0.82 +0.2
2,836,276 + PGA1_c27210 0.85 -0.9
2,836,386 - -0.3
2,836,406 + +0.1
2,836,411 + +0.2
2,836,440 + +0.1
2,836,463 + +0.0
2,836,463 + -0.5
2,836,481 - PGA1_c27220 0.10 +0.6
2,836,490 + PGA1_c27220 0.11 +0.6
2,836,515 + PGA1_c27220 0.13 -0.2
2,836,516 - PGA1_c27220 0.13 +0.5

Or see this region's nucleotide sequence