Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21530

Experiment: m.b. Doxycycline hyclate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21520 and PGA1_c21525 are separated by 202 nucleotidesPGA1_c21525 and PGA1_c21530 are separated by 88 nucleotidesPGA1_c21530 and PGA1_c21540 are separated by 6 nucleotides PGA1_c21520: PGA1_c21520 - hypothetical protein, at 2,230,107 to 2,231,042 _c21520 PGA1_c21525: PGA1_c21525 - hypothetical protein, at 2,231,245 to 2,231,850 _c21525 PGA1_c21530: PGA1_c21530 - hypothetical protein, at 2,231,939 to 2,232,466 _c21530 PGA1_c21540: PGA1_c21540 - propionyl-CoA carboxylase alpha chain, at 2,232,473 to 2,234,518 _c21540 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -1 0 1at 2231.051 kb on - strandat 2231.051 kb on - strandat 2231.056 kb on - strandat 2231.056 kb on - strandat 2231.098 kb on + strandat 2231.098 kb on + strandat 2231.098 kb on + strandat 2231.098 kb on + strandat 2231.106 kb on - strandat 2231.188 kb on + strandat 2231.196 kb on - strandat 2231.766 kb on + strand, within PGA1_c21525at 2232.081 kb on - strand, within PGA1_c21530at 2232.154 kb on - strand, within PGA1_c21530at 2232.198 kb on + strand, within PGA1_c21530at 2232.206 kb on - strand, within PGA1_c21530

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml
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2,231,051 - -0.1
2,231,051 - -1.0
2,231,056 - -1.2
2,231,056 - -0.2
2,231,098 + +0.6
2,231,098 + -0.4
2,231,098 + -0.5
2,231,098 + -0.1
2,231,106 - -0.7
2,231,188 + +0.7
2,231,196 - -0.8
2,231,766 + PGA1_c21525 0.86 -0.3
2,232,081 - PGA1_c21530 0.27 +0.6
2,232,154 - PGA1_c21530 0.41 +0.4
2,232,198 + PGA1_c21530 0.49 +0.5
2,232,206 - PGA1_c21530 0.51 +0.1

Or see this region's nucleotide sequence