Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17010 and PGA1_c17020 are separated by 106 nucleotides PGA1_c17020 and PGA1_c17030 overlap by 10 nucleotides PGA1_c17030 and PGA1_c17040 are separated by 122 nucleotides PGA1_c17040 and PGA1_c17050 are separated by 53 nucleotides
PGA1_c17010: PGA1_c17010 - cytochrome c-type biogenesis protein CcmF, at 1,776,721 to 1,778,685
_c17010
PGA1_c17020: PGA1_c17020 - Protein of unknown function (DUF3154)., at 1,778,792 to 1,779,403
_c17020
PGA1_c17030: PGA1_c17030 - peptidoglycan binding domain-containing protein, at 1,779,394 to 1,780,005
_c17030
PGA1_c17040: PGA1_c17040 - cytochrome c-type biogenesis protein CcmE, at 1,780,128 to 1,780,571
_c17040
PGA1_c17050: PGA1_c17050 - N-acetyl-gamma-glutamyl-phosphate reductase ArgC, at 1,780,625 to 1,781,653
_c17050
Position (kb)
1779
1780
1781 Strain fitness (log2 ratio)
-2
-1
0
1 at 1778.796 kb on - strand at 1778.802 kb on + strand at 1778.802 kb on + strand at 1778.812 kb on + strand at 1778.830 kb on + strand at 1778.859 kb on + strand, within PGA1_c17020 at 1778.898 kb on - strand, within PGA1_c17020 at 1778.916 kb on - strand, within PGA1_c17020 at 1778.969 kb on - strand, within PGA1_c17020 at 1779.232 kb on - strand, within PGA1_c17020 at 1779.263 kb on - strand, within PGA1_c17020 at 1779.339 kb on - strand, within PGA1_c17020 at 1779.346 kb on - strand at 1779.387 kb on + strand at 1779.388 kb on - strand at 1779.450 kb on - strand at 1779.596 kb on - strand, within PGA1_c17030 at 1779.877 kb on - strand, within PGA1_c17030 at 1779.911 kb on - strand, within PGA1_c17030 at 1779.945 kb on + strand at 1780.118 kb on - strand at 1780.588 kb on - strand at 1780.614 kb on + strand at 1780.880 kb on + strand, within PGA1_c17050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 1,778,796 - +1.6 1,778,802 + -0.2 1,778,802 + -0.8 1,778,812 + -0.4 1,778,830 + +1.5 1,778,859 + PGA1_c17020 0.11 +0.6 1,778,898 - PGA1_c17020 0.17 -2.1 1,778,916 - PGA1_c17020 0.20 +0.0 1,778,969 - PGA1_c17020 0.29 -0.8 1,779,232 - PGA1_c17020 0.72 -0.6 1,779,263 - PGA1_c17020 0.77 +0.7 1,779,339 - PGA1_c17020 0.89 +0.4 1,779,346 - +0.2 1,779,387 + +0.3 1,779,388 - -0.8 1,779,450 - -0.1 1,779,596 - PGA1_c17030 0.33 +0.2 1,779,877 - PGA1_c17030 0.79 +1.0 1,779,911 - PGA1_c17030 0.84 +0.5 1,779,945 + +0.4 1,780,118 - +0.4 1,780,588 - +0.9 1,780,614 + -0.7 1,780,880 + PGA1_c17050 0.25 +1.0
Or see this region's nucleotide sequence