Experiment: m.b. Doxycycline hyclate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11410 and PGA1_c11420 are separated by 174 nucleotides PGA1_c11420 and PGA1_c11430 are separated by 65 nucleotides
PGA1_c11410: PGA1_c11410 - putative integral membrane protein, at 1,181,642 to 1,182,538
_c11410
PGA1_c11420: PGA1_c11420 - enolase Eno, at 1,182,713 to 1,183,987
_c11420
PGA1_c11430: PGA1_c11430 - hypothetical protein, at 1,184,053 to 1,184,568
_c11430
Position (kb)
1182
1183
1184 Strain fitness (log2 ratio)
-1
0
1 at 1181.741 kb on + strand, within PGA1_c11410 at 1181.765 kb on - strand, within PGA1_c11410 at 1181.808 kb on - strand, within PGA1_c11410 at 1181.815 kb on + strand, within PGA1_c11410 at 1181.886 kb on + strand, within PGA1_c11410 at 1181.935 kb on + strand, within PGA1_c11410 at 1181.943 kb on - strand, within PGA1_c11410 at 1181.985 kb on - strand, within PGA1_c11410 at 1182.040 kb on + strand, within PGA1_c11410 at 1182.139 kb on + strand, within PGA1_c11410 at 1182.145 kb on + strand, within PGA1_c11410 at 1182.158 kb on - strand, within PGA1_c11410 at 1182.182 kb on + strand, within PGA1_c11410 at 1182.258 kb on + strand, within PGA1_c11410 at 1182.394 kb on - strand, within PGA1_c11410 at 1182.394 kb on - strand, within PGA1_c11410 at 1182.396 kb on + strand, within PGA1_c11410 at 1182.404 kb on - strand, within PGA1_c11410 at 1182.444 kb on - strand, within PGA1_c11410 at 1182.459 kb on + strand at 1182.469 kb on + strand at 1182.541 kb on - strand at 1183.971 kb on + strand at 1183.979 kb on - strand at 1183.979 kb on - strand at 1184.048 kb on + strand at 1184.107 kb on - strand, within PGA1_c11430 at 1184.123 kb on - strand, within PGA1_c11430 at 1184.227 kb on + strand, within PGA1_c11430 at 1184.232 kb on + strand, within PGA1_c11430 at 1184.232 kb on + strand, within PGA1_c11430 at 1184.239 kb on + strand, within PGA1_c11430 at 1184.240 kb on - strand, within PGA1_c11430 at 1184.240 kb on - strand, within PGA1_c11430 at 1184.317 kb on - strand, within PGA1_c11430 at 1184.379 kb on + strand, within PGA1_c11430 at 1184.419 kb on - strand, within PGA1_c11430 at 1184.448 kb on - strand, within PGA1_c11430 at 1184.521 kb on + strand at 1184.521 kb on + strand at 1184.529 kb on - strand at 1184.590 kb on - strand at 1184.607 kb on + strand at 1184.616 kb on - strand at 1184.655 kb on - strand at 1184.667 kb on - strand at 1184.703 kb on + strand at 1184.740 kb on - strand at 1184.789 kb on + strand at 1184.797 kb on - strand at 1184.861 kb on + strand at 1184.876 kb on + strand at 1184.894 kb on - strand at 1184.905 kb on + strand at 1184.915 kb on + strand at 1184.923 kb on - strand at 1184.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.002 mg/ml remove 1,181,741 + PGA1_c11410 0.11 +1.2 1,181,765 - PGA1_c11410 0.14 +0.2 1,181,808 - PGA1_c11410 0.19 -0.8 1,181,815 + PGA1_c11410 0.19 +0.8 1,181,886 + PGA1_c11410 0.27 +0.6 1,181,935 + PGA1_c11410 0.33 +0.5 1,181,943 - PGA1_c11410 0.34 +0.3 1,181,985 - PGA1_c11410 0.38 +1.1 1,182,040 + PGA1_c11410 0.44 +0.8 1,182,139 + PGA1_c11410 0.55 +0.1 1,182,145 + PGA1_c11410 0.56 +1.4 1,182,158 - PGA1_c11410 0.58 +0.5 1,182,182 + PGA1_c11410 0.60 +0.0 1,182,258 + PGA1_c11410 0.69 -0.6 1,182,394 - PGA1_c11410 0.84 -0.6 1,182,394 - PGA1_c11410 0.84 -0.5 1,182,396 + PGA1_c11410 0.84 +0.5 1,182,404 - PGA1_c11410 0.85 +0.4 1,182,444 - PGA1_c11410 0.89 +1.3 1,182,459 + -0.7 1,182,469 + -1.3 1,182,541 - +0.2 1,183,971 + -0.2 1,183,979 - -0.2 1,183,979 - +0.3 1,184,048 + -0.1 1,184,107 - PGA1_c11430 0.10 +0.3 1,184,123 - PGA1_c11430 0.14 +0.6 1,184,227 + PGA1_c11430 0.34 +0.2 1,184,232 + PGA1_c11430 0.35 +0.4 1,184,232 + PGA1_c11430 0.35 -0.1 1,184,239 + PGA1_c11430 0.36 -1.1 1,184,240 - PGA1_c11430 0.36 +0.6 1,184,240 - PGA1_c11430 0.36 +0.2 1,184,317 - PGA1_c11430 0.51 -0.9 1,184,379 + PGA1_c11430 0.63 +0.7 1,184,419 - PGA1_c11430 0.71 -0.4 1,184,448 - PGA1_c11430 0.77 +0.4 1,184,521 + +1.0 1,184,521 + +0.7 1,184,529 - -0.9 1,184,590 - -0.8 1,184,607 + +0.6 1,184,616 - +0.1 1,184,655 - +0.0 1,184,667 - +0.3 1,184,703 + +0.1 1,184,740 - +0.5 1,184,789 + +0.5 1,184,797 - +1.3 1,184,861 + -0.8 1,184,876 + +0.3 1,184,894 - -0.5 1,184,905 + +0.2 1,184,915 + -0.4 1,184,923 - +0.1 1,184,957 - +0.1
Or see this region's nucleotide sequence