Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2693

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2691 and DvMF_2692 overlap by 4 nucleotidesDvMF_2692 and DvMF_2693 are separated by 195 nucleotidesDvMF_2693 and DvMF_R0072 are separated by 442 nucleotidesDvMF_R0072 and DvMF_2694 are separated by 223 nucleotides DvMF_2691: DvMF_2691 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq), at 3,404,242 to 3,405,747 _2691 DvMF_2692: DvMF_2692 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 3,405,744 to 3,406,334 _2692 DvMF_2693: DvMF_2693 - histidine kinase (RefSeq), at 3,406,530 to 3,408,245 _2693 DvMF_R0072: DvMF_R0072 - tRNA-Ser (RefSeq), at 3,408,688 to 3,408,779 _R0072 DvMF_2694: DvMF_2694 - GDP-mannose 4,6-dehydratase (RefSeq), at 3,409,003 to 3,410,208 _2694 Position (kb) 3406 3407 3408 3409Strain fitness (log2 ratio) -3 -2 -1 0 1at 3405.867 kb on + strand, within DvMF_2692at 3405.878 kb on + strand, within DvMF_2692at 3405.878 kb on + strand, within DvMF_2692at 3405.878 kb on + strand, within DvMF_2692at 3405.975 kb on - strand, within DvMF_2692at 3405.980 kb on + strand, within DvMF_2692at 3405.988 kb on - strand, within DvMF_2692at 3406.028 kb on + strand, within DvMF_2692at 3406.108 kb on + strand, within DvMF_2692at 3406.125 kb on - strand, within DvMF_2692at 3406.173 kb on - strand, within DvMF_2692at 3406.178 kb on - strand, within DvMF_2692at 3406.235 kb on + strand, within DvMF_2692at 3406.353 kb on - strandat 3406.558 kb on + strandat 3406.799 kb on + strand, within DvMF_2693at 3407.123 kb on - strand, within DvMF_2693at 3407.173 kb on - strand, within DvMF_2693at 3407.204 kb on - strand, within DvMF_2693at 3407.638 kb on + strand, within DvMF_2693at 3407.678 kb on + strand, within DvMF_2693at 3407.720 kb on + strand, within DvMF_2693at 3407.844 kb on - strand, within DvMF_2693at 3408.335 kb on + strandat 3408.627 kb on - strandat 3408.627 kb on - strandat 3408.627 kb on - strandat 3408.976 kb on + strandat 3409.148 kb on - strand, within DvMF_2694

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,405,867 + DvMF_2692 0.21 -1.8
3,405,878 + DvMF_2692 0.23 -2.6
3,405,878 + DvMF_2692 0.23 -1.7
3,405,878 + DvMF_2692 0.23 -1.8
3,405,975 - DvMF_2692 0.39 -2.1
3,405,980 + DvMF_2692 0.40 -1.3
3,405,988 - DvMF_2692 0.41 -0.0
3,406,028 + DvMF_2692 0.48 -0.2
3,406,108 + DvMF_2692 0.62 -2.2
3,406,125 - DvMF_2692 0.64 -1.2
3,406,173 - DvMF_2692 0.73 -1.2
3,406,178 - DvMF_2692 0.73 -1.1
3,406,235 + DvMF_2692 0.83 -0.7
3,406,353 - -0.5
3,406,558 + -1.7
3,406,799 + DvMF_2693 0.16 -1.9
3,407,123 - DvMF_2693 0.35 -2.2
3,407,173 - DvMF_2693 0.37 -3.0
3,407,204 - DvMF_2693 0.39 -1.7
3,407,638 + DvMF_2693 0.65 -1.2
3,407,678 + DvMF_2693 0.67 -1.6
3,407,720 + DvMF_2693 0.69 -2.3
3,407,844 - DvMF_2693 0.77 -1.7
3,408,335 + -0.3
3,408,627 - -0.3
3,408,627 - -0.4
3,408,627 - -0.5
3,408,976 + -0.8
3,409,148 - DvMF_2694 0.12 -0.7

Or see this region's nucleotide sequence