Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2392

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2390 and DvMF_2391 are separated by 43 nucleotidesDvMF_2391 and DvMF_2392 are separated by 138 nucleotidesDvMF_2392 and DvMF_2393 are separated by 155 nucleotides DvMF_2390: DvMF_2390 - arsenite-activated ATPase ArsA (RefSeq), at 3,022,402 to 3,024,141 _2390 DvMF_2391: DvMF_2391 - Arsenical resistance operon trans-acting repressor ArsD (RefSeq), at 3,024,185 to 3,024,508 _2391 DvMF_2392: DvMF_2392 - transcriptional regulator, ArsR family (RefSeq), at 3,024,647 to 3,025,000 _2392 DvMF_2393: DvMF_2393 - hypothetical protein (RefSeq), at 3,025,156 to 3,025,932 _2393 Position (kb) 3024 3025 3026Strain fitness (log2 ratio) -1 0 1at 3023.647 kb on + strand, within DvMF_2390at 3023.709 kb on - strand, within DvMF_2390at 3024.147 kb on - strandat 3024.366 kb on + strand, within DvMF_2391at 3024.366 kb on + strand, within DvMF_2391at 3024.374 kb on - strand, within DvMF_2391at 3024.622 kb on + strandat 3024.915 kb on - strand, within DvMF_2392at 3024.954 kb on + strand, within DvMF_2392at 3025.059 kb on + strandat 3025.067 kb on - strandat 3025.204 kb on + strandat 3025.235 kb on + strand, within DvMF_2393at 3025.243 kb on - strand, within DvMF_2393at 3025.470 kb on - strand, within DvMF_2393at 3025.470 kb on - strand, within DvMF_2393at 3025.613 kb on + strand, within DvMF_2393at 3025.950 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,023,647 + DvMF_2390 0.72 -0.3
3,023,709 - DvMF_2390 0.75 -0.2
3,024,147 - -0.1
3,024,366 + DvMF_2391 0.56 -0.2
3,024,366 + DvMF_2391 0.56 -0.4
3,024,374 - DvMF_2391 0.58 -0.2
3,024,622 + -0.1
3,024,915 - DvMF_2392 0.76 -0.4
3,024,954 + DvMF_2392 0.87 -1.7
3,025,059 + -0.2
3,025,067 - -0.5
3,025,204 + -0.5
3,025,235 + DvMF_2393 0.10 -0.2
3,025,243 - DvMF_2393 0.11 -0.8
3,025,470 - DvMF_2393 0.40 -0.5
3,025,470 - DvMF_2393 0.40 -0.2
3,025,613 + DvMF_2393 0.59 -0.5
3,025,950 + -0.2

Or see this region's nucleotide sequence