Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1238

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1236 and DvMF_1237 are separated by 304 nucleotidesDvMF_1237 and DvMF_1238 are separated by 98 nucleotidesDvMF_1238 and DvMF_1239 are separated by 385 nucleotides DvMF_1236: DvMF_1236 - hypothetical protein (RefSeq), at 1,523,943 to 1,524,692 _1236 DvMF_1237: DvMF_1237 - CreA family protein (RefSeq), at 1,524,997 to 1,525,536 _1237 DvMF_1238: DvMF_1238 - spermine synthase (RefSeq), at 1,525,635 to 1,527,209 _1238 DvMF_1239: DvMF_1239 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,527,595 to 1,527,954 _1239 Position (kb) 1525 1526 1527 1528Strain fitness (log2 ratio) -1 0 1at 1524.884 kb on - strandat 1525.011 kb on + strandat 1525.291 kb on - strand, within DvMF_1237at 1525.383 kb on - strand, within DvMF_1237at 1525.536 kb on + strandat 1525.653 kb on + strandat 1525.819 kb on - strand, within DvMF_1238at 1525.911 kb on - strand, within DvMF_1238at 1525.955 kb on - strand, within DvMF_1238at 1526.148 kb on - strand, within DvMF_1238at 1526.302 kb on - strand, within DvMF_1238at 1526.496 kb on + strand, within DvMF_1238at 1526.586 kb on - strand, within DvMF_1238at 1526.642 kb on - strand, within DvMF_1238at 1526.787 kb on - strand, within DvMF_1238at 1526.787 kb on - strand, within DvMF_1238at 1526.839 kb on + strand, within DvMF_1238at 1526.852 kb on - strand, within DvMF_1238at 1526.862 kb on - strand, within DvMF_1238at 1527.243 kb on - strandat 1527.492 kb on - strandat 1527.668 kb on - strand, within DvMF_1239at 1527.912 kb on + strand, within DvMF_1239at 1527.975 kb on + strandat 1528.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,524,884 - -0.3
1,525,011 + -0.5
1,525,291 - DvMF_1237 0.54 -0.7
1,525,383 - DvMF_1237 0.71 -0.6
1,525,536 + -0.1
1,525,653 + -0.3
1,525,819 - DvMF_1238 0.12 -0.2
1,525,911 - DvMF_1238 0.18 -0.4
1,525,955 - DvMF_1238 0.20 -0.5
1,526,148 - DvMF_1238 0.33 -0.2
1,526,302 - DvMF_1238 0.42 -0.5
1,526,496 + DvMF_1238 0.55 +0.1
1,526,586 - DvMF_1238 0.60 -0.2
1,526,642 - DvMF_1238 0.64 -0.1
1,526,787 - DvMF_1238 0.73 -0.4
1,526,787 - DvMF_1238 0.73 -0.3
1,526,839 + DvMF_1238 0.76 +0.4
1,526,852 - DvMF_1238 0.77 -0.3
1,526,862 - DvMF_1238 0.78 -0.1
1,527,243 - -0.3
1,527,492 - +1.6
1,527,668 - DvMF_1239 0.20 -0.5
1,527,912 + DvMF_1239 0.88 +0.2
1,527,975 + -0.4
1,528,107 - -0.4

Or see this region's nucleotide sequence