Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1217 and DvMF_1218 are separated by 74 nucleotides DvMF_1218 and DvMF_1219 are separated by 603 nucleotides DvMF_1219 and DvMF_1220 are separated by 122 nucleotides
DvMF_1217: DvMF_1217 - formate dehydrogenase, alpha subunit (RefSeq), at 1,498,036 to 1,501,062
_1217
DvMF_1218: DvMF_1218 - hypothetical protein (RefSeq), at 1,501,137 to 1,501,373
_1218
DvMF_1219: DvMF_1219 - transposase, putative (RefSeq), at 1,501,977 to 1,502,900
_1219
DvMF_1220: DvMF_1220 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 1,503,023 to 1,503,805
_1220
Position (kb)
1501
1502
1503 Strain fitness (log2 ratio)
-1
0
1 at 1501.534 kb on - strand at 1501.725 kb on - strand at 1501.853 kb on + strand at 1501.853 kb on + strand at 1502.790 kb on - strand, within DvMF_1219 at 1502.841 kb on + strand at 1502.921 kb on - strand at 1503.002 kb on - strand at 1503.109 kb on + strand, within DvMF_1220 at 1503.136 kb on + strand, within DvMF_1220 at 1503.207 kb on + strand, within DvMF_1220 at 1503.406 kb on - strand, within DvMF_1220 at 1503.485 kb on - strand, within DvMF_1220 at 1503.623 kb on - strand, within DvMF_1220 at 1503.813 kb on + strand at 1503.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,501,534 - +0.5 1,501,725 - -0.3 1,501,853 + -1.3 1,501,853 + -0.7 1,502,790 - DvMF_1219 0.88 -0.2 1,502,841 + -0.7 1,502,921 - -0.8 1,503,002 - -0.5 1,503,109 + DvMF_1220 0.11 -0.9 1,503,136 + DvMF_1220 0.14 -0.4 1,503,207 + DvMF_1220 0.23 -0.5 1,503,406 - DvMF_1220 0.49 -0.3 1,503,485 - DvMF_1220 0.59 +0.3 1,503,623 - DvMF_1220 0.77 -0.5 1,503,813 + -0.4 1,503,813 + -0.1
Or see this region's nucleotide sequence