Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1122 and DvMF_1123 are separated by 108 nucleotides DvMF_1123 and DvMF_1124 are separated by 150 nucleotides
DvMF_1122: DvMF_1122 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 1,378,795 to 1,380,240
_1122
DvMF_1123: DvMF_1123 - queuosine biosynthesis protein QueD (RefSeq), at 1,380,349 to 1,380,717
_1123
DvMF_1124: DvMF_1124 - radical SAM domain protein (RefSeq), at 1,380,868 to 1,381,542
_1124
Position (kb)
1378
1379
1380
1381 Strain fitness (log2 ratio)
-1
0
1
2 at 1377.977 kb on + strand at 1377.982 kb on + strand at 1378.000 kb on + strand at 1378.479 kb on + strand at 1378.704 kb on - strand at 1378.781 kb on - strand at 1378.921 kb on + strand at 1378.944 kb on + strand, within DvMF_1122 at 1379.135 kb on - strand, within DvMF_1122 at 1379.266 kb on + strand, within DvMF_1122 at 1379.284 kb on - strand, within DvMF_1122 at 1379.323 kb on - strand, within DvMF_1122 at 1379.370 kb on + strand, within DvMF_1122 at 1379.553 kb on + strand, within DvMF_1122 at 1379.600 kb on - strand, within DvMF_1122 at 1379.883 kb on - strand, within DvMF_1122 at 1380.085 kb on - strand, within DvMF_1122 at 1380.279 kb on - strand at 1380.285 kb on - strand at 1380.825 kb on - strand at 1380.856 kb on + strand at 1380.921 kb on - strand at 1381.171 kb on + strand, within DvMF_1124 at 1381.171 kb on + strand, within DvMF_1124
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,377,977 + -0.4 1,377,982 + -0.3 1,378,000 + -0.4 1,378,479 + -0.1 1,378,704 - -0.1 1,378,781 - -0.2 1,378,921 + +0.0 1,378,944 + DvMF_1122 0.10 -0.2 1,379,135 - DvMF_1122 0.24 -0.0 1,379,266 + DvMF_1122 0.33 +0.2 1,379,284 - DvMF_1122 0.34 +2.4 1,379,323 - DvMF_1122 0.37 -0.0 1,379,370 + DvMF_1122 0.40 +0.1 1,379,553 + DvMF_1122 0.52 -0.2 1,379,600 - DvMF_1122 0.56 -0.4 1,379,883 - DvMF_1122 0.75 +0.1 1,380,085 - DvMF_1122 0.89 -0.1 1,380,279 - -0.2 1,380,285 - -0.3 1,380,825 - -0.2 1,380,856 + -0.7 1,380,921 - -0.4 1,381,171 + DvMF_1124 0.45 -0.3 1,381,171 + DvMF_1124 0.45 -0.6
Or see this region's nucleotide sequence