Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0231

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0230 and DvMF_0231 overlap by 8 nucleotidesDvMF_0231 and DvMF_0232 are separated by 254 nucleotidesDvMF_0232 and DvMF_0233 are separated by 31 nucleotidesDvMF_0233 and DvMF_0234 are separated by 115 nucleotides DvMF_0230: DvMF_0230 - McrBC 5-methylcytosine restriction system component-like protein (RefSeq), at 257,241 to 258,434 _0230 DvMF_0231: DvMF_0231 - ATPase associated with various cellular activities AAA_5 (RefSeq), at 258,427 to 259,959 _0231 DvMF_0232: DvMF_0232 - no description, at 260,214 to 260,414 _0232 DvMF_0233: DvMF_0233 - no description, at 260,446 to 260,712 _0233 DvMF_0234: DvMF_0234 - GTP-dependent nucleic acid-binding protein EngD (RefSeq), at 260,828 to 261,928 _0234 Position (kb) 258 259 260Strain fitness (log2 ratio) -1 0 1at 259.286 kb on - strand, within DvMF_0231at 259.521 kb on - strand, within DvMF_0231at 260.482 kb on - strand, within DvMF_0233at 260.534 kb on + strand, within DvMF_0233at 260.564 kb on - strand, within DvMF_0233at 260.564 kb on - strand, within DvMF_0233at 260.564 kb on - strand, within DvMF_0233at 260.647 kb on + strand, within DvMF_0233at 260.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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259,286 - DvMF_0231 0.56 -0.7
259,521 - DvMF_0231 0.71 -0.3
260,482 - DvMF_0233 0.13 -0.6
260,534 + DvMF_0233 0.33 -0.8
260,564 - DvMF_0233 0.44 -0.3
260,564 - DvMF_0233 0.44 -0.4
260,564 - DvMF_0233 0.44 -0.6
260,647 + DvMF_0233 0.75 -0.4
260,794 - -0.7

Or see this region's nucleotide sequence