Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0224

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0223 and DvMF_0224 overlap by 4 nucleotidesDvMF_0224 and DvMF_0225 are separated by 16 nucleotidesDvMF_0225 and DvMF_0226 are separated by 315 nucleotides DvMF_0223: DvMF_0223 - glycine dehydrogenase subunit 2 (RefSeq), at 249,806 to 251,251 _0223 DvMF_0224: DvMF_0224 - glycine dehydrogenase subunit 1 (RefSeq), at 251,248 to 252,579 _0224 DvMF_0225: DvMF_0225 - glycine cleavage system protein H (RefSeq), at 252,596 to 252,979 _0225 DvMF_0226: DvMF_0226 - response regulator receiver protein (RefSeq), at 253,295 to 253,708 _0226 Position (kb) 251 252 253Strain fitness (log2 ratio) -1 0 1at 250.465 kb on - strand, within DvMF_0223at 250.597 kb on + strand, within DvMF_0223at 250.605 kb on - strand, within DvMF_0223at 250.697 kb on + strand, within DvMF_0223at 250.713 kb on - strand, within DvMF_0223at 250.766 kb on - strand, within DvMF_0223at 250.785 kb on + strand, within DvMF_0223at 250.858 kb on - strand, within DvMF_0223at 250.955 kb on - strand, within DvMF_0223at 251.075 kb on + strand, within DvMF_0223at 251.118 kb on - strandat 251.124 kb on + strandat 251.125 kb on + strandat 251.297 kb on - strandat 251.350 kb on - strandat 251.392 kb on + strand, within DvMF_0224at 251.393 kb on - strand, within DvMF_0224at 251.601 kb on + strand, within DvMF_0224at 251.900 kb on + strand, within DvMF_0224at 252.217 kb on - strand, within DvMF_0224at 252.302 kb on + strand, within DvMF_0224at 252.302 kb on + strand, within DvMF_0224at 252.358 kb on + strand, within DvMF_0224at 252.550 kb on - strandat 252.552 kb on + strandat 252.552 kb on + strandat 252.552 kb on + strandat 252.552 kb on + strandat 252.560 kb on - strandat 252.679 kb on + strand, within DvMF_0225at 252.701 kb on - strand, within DvMF_0225at 252.995 kb on + strandat 253.061 kb on + strandat 253.082 kb on - strandat 253.112 kb on - strandat 253.152 kb on - strandat 253.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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250,465 - DvMF_0223 0.46 -0.3
250,597 + DvMF_0223 0.55 -0.9
250,605 - DvMF_0223 0.55 -0.3
250,697 + DvMF_0223 0.62 -0.2
250,713 - DvMF_0223 0.63 -0.3
250,766 - DvMF_0223 0.66 -0.2
250,785 + DvMF_0223 0.68 +0.0
250,858 - DvMF_0223 0.73 -1.1
250,955 - DvMF_0223 0.79 -0.5
251,075 + DvMF_0223 0.88 -0.2
251,118 - -0.6
251,124 + -0.3
251,125 + -0.3
251,297 - -0.3
251,350 - -0.2
251,392 + DvMF_0224 0.11 -0.3
251,393 - DvMF_0224 0.11 -0.1
251,601 + DvMF_0224 0.27 -1.3
251,900 + DvMF_0224 0.49 -0.3
252,217 - DvMF_0224 0.73 -0.5
252,302 + DvMF_0224 0.79 -0.6
252,302 + DvMF_0224 0.79 +0.2
252,358 + DvMF_0224 0.83 -0.5
252,550 - -1.5
252,552 + -1.6
252,552 + -1.1
252,552 + -0.5
252,552 + -0.3
252,560 - -1.0
252,679 + DvMF_0225 0.22 -0.7
252,701 - DvMF_0225 0.27 -0.3
252,995 + -0.6
253,061 + -0.7
253,082 - -0.6
253,112 - -0.7
253,152 - -0.8
253,252 + -0.9

Or see this region's nucleotide sequence