Strain Fitness in Shewanella amazonensis SB2B around Sama_3620

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
4,259,195	-				+0.1
4,259,234	+				+0.9
4,259,234	+				+0.6
4,259,234	+				+1.0
4,259,234	+				-2.1
4,259,234	+				+0.5
4,259,234	+				+0.6
4,259,234	+				-0.3
4,259,235	-				+3.4
4,259,235	-				+3.6
4,259,235	-				-1.8
4,259,235	-				-0.7
4,259,235	-				-0.7
4,259,235	-				-1.8
4,259,299	+				+0.0
4,259,299	+				+0.0
4,259,299	+				+0.9
4,259,300	-				+3.1
4,259,300	-				-0.7
4,259,300	-				+0.6
4,259,300	-				+1.6
4,259,304	+				-2.8
4,259,304	+				-1.1
4,259,305	-				+0.9
4,259,305	-				+1.2
4,259,305	-				+1.0
4,259,311	+				+0.5
4,259,323	+				-2.6
4,259,323	+				+1.6
4,259,323	+				+1.0
4,259,324	-				+2.5
4,259,324	-				-0.9
4,259,324	-				+1.0
4,259,328	+				+0.5
4,259,329	-				+0.0
4,259,402	+				+0.2
4,259,482	+		Sama_3619	0.16	+2.3
4,259,482	+		Sama_3619	0.16	+1.4
4,259,482	+		Sama_3619	0.16	+1.6
4,259,483	-		Sama_3619	0.16	+3.2
4,259,487	+		Sama_3619	0.16	+0.8
4,259,487	+		Sama_3619	0.16	+2.0
4,259,487	+		Sama_3619	0.16	-1.0
4,259,488	-		Sama_3619	0.17	-1.2
4,259,488	-		Sama_3619	0.17	+0.3
4,259,488	-		Sama_3619	0.17	+3.0
4,259,502	-		Sama_3619	0.18	+0.9
4,259,502	-		Sama_3619	0.18	-2.1
4,259,502	-		Sama_3619	0.18	+2.8
4,259,502	-		Sama_3619	0.18	+2.9
4,259,551	+		Sama_3619	0.24	+0.5
4,259,716	+		Sama_3619	0.43	-2.0
4,259,716	+		Sama_3619	0.43	+2.3
4,259,716	+		Sama_3619	0.43	+1.4
4,259,717	-		Sama_3619	0.44	-1.2
4,259,717	-		Sama_3619	0.44	+1.6
4,259,812	+		Sama_3619	0.55	-1.0
4,259,826	+		Sama_3619	0.56	-1.6
4,259,827	-		Sama_3619	0.57	+1.5
4,259,827	-		Sama_3619	0.57	+1.6
4,259,876	+		Sama_3619	0.62	+1.4
4,259,876	+		Sama_3619	0.62	+0.3
4,259,876	+		Sama_3619	0.62	-2.6
4,259,876	+		Sama_3619	0.62	-0.2
4,259,877	-		Sama_3619	0.62	+3.9
4,259,877	-		Sama_3619	0.62	+2.2
4,259,877	-		Sama_3619	0.62	+1.0
4,259,877	-		Sama_3619	0.62	+2.4
4,259,877	-		Sama_3619	0.62	+2.0
4,259,877	-		Sama_3619	0.62	-1.7
4,259,877	-		Sama_3619	0.62	+1.2
4,259,915	+		Sama_3619	0.67	+1.0
4,259,916	-		Sama_3619	0.67	-0.7
4,259,943	-		Sama_3619	0.70	-1.1
4,259,974	+		Sama_3619	0.74	+2.1
4,259,977	-		Sama_3619	0.74	-1.3
4,260,008	+		Sama_3619	0.78	-0.2
4,260,009	-		Sama_3619	0.78	-2.3
4,260,009	-		Sama_3619	0.78	+1.8
4,260,029	+		Sama_3619	0.80	-0.5
4,260,029	+		Sama_3619	0.80	+1.1
4,260,029	+		Sama_3619	0.80	-2.6
4,260,029	+		Sama_3619	0.80	-0.1
4,260,029	+		Sama_3619	0.80	+1.5
4,260,029	+		Sama_3619	0.80	-2.8
4,260,029	+		Sama_3619	0.80	+0.8
4,260,029	+		Sama_3619	0.80	+0.1
4,260,029	+		Sama_3619	0.80	-0.5
4,260,030	-		Sama_3619	0.80	-1.4
4,260,030	-		Sama_3619	0.80	-1.2
4,260,030	-		Sama_3619	0.80	-1.0
4,260,030	-		Sama_3619	0.80	-0.6
4,260,030	-		Sama_3619	0.80	-1.1
4,260,030	-		Sama_3619	0.80	+1.3
4,260,035	+		Sama_3619	0.81	+1.6
4,260,035	+		Sama_3619	0.81	+2.1
4,260,035	+		Sama_3619	0.81	-1.6
4,260,035	+		Sama_3619	0.81	-1.7
4,260,036	-		Sama_3619	0.81	+2.6
4,260,036	-		Sama_3619	0.81	-0.4
4,260,036	-		Sama_3619	0.81	+0.4
4,260,134	+				-1.0
4,260,135	-				+1.0
4,260,135	-				+1.2
4,260,136	+				-1.1
4,260,136	+				+1.5
4,260,136	+				-1.0
4,260,136	+				+0.5
4,260,136	+				-1.1
4,260,136	+				-2.1
4,260,136	+				+0.1
4,260,136	+				+0.7
4,260,137	-				+1.1
4,260,137	-				+1.3
4,260,137	-				+2.6
4,260,137	-				-2.3
4,260,137	-				-0.5
4,260,137	-				-1.2
4,260,137	-				+1.4
4,260,156	-				+1.5
4,260,156	-				-0.4
4,260,193	+				-0.2
4,260,193	+				+0.0
4,260,193	+				+2.1
4,260,193	+				+0.0
4,260,219	+				-0.4
4,260,219	+				-1.4
4,260,219	+				+0.4
4,260,219	+				+0.6
4,260,219	+				+2.6
4,260,219	+				+1.4
4,260,219	+				+1.0
4,260,219	+				-1.2
4,260,219	+				+3.5
4,260,219	+				-2.5
4,260,219	+				+0.4
4,260,219	+				+2.4
4,260,219	+				+0.2
4,260,219	+				-1.0
4,260,219	+				+1.9
4,260,219	+				+3.0
4,260,219	+				+2.2
4,260,220	-				-1.3
4,260,220	-				+0.5
4,260,220	-				+1.6
4,260,220	-				-0.5
4,260,220	-				-1.3
4,260,220	-				+3.0
4,260,220	-				+0.3
4,260,220	-				-0.9
4,260,220	-				+0.4
4,260,220	-				-1.0
4,260,220	-				-1.9
4,260,220	-				-1.9
4,260,220	-				-2.4
4,260,220	-				+1.4
4,260,221	+				-1.7
4,260,221	+				+0.0
4,260,221	+				+1.5
4,260,221	+				-1.7
4,260,221	+				-1.9
4,260,221	+				+1.1
4,260,222	-				+1.1
4,260,222	-				+1.6
4,260,222	-				-1.1
4,260,222	-				+1.1
4,260,222	-				+0.0
4,260,222	-				+0.8
4,260,222	-				-0.3
4,260,246	+				-1.6
4,260,274	-				+0.9
4,260,293	+		Sama_3620	0.11	-1.4
4,260,294	-		Sama_3620	0.11	-2.3
4,260,358	+		Sama_3620	0.18	+0.5
4,260,374	+		Sama_3620	0.20	+0.5
4,260,460	+		Sama_3620	0.29	+1.5
4,260,460	+		Sama_3620	0.29	+0.4
4,260,483	+		Sama_3620	0.32	+2.2
4,260,484	-		Sama_3620	0.32	-0.8
4,260,484	-		Sama_3620	0.32	-1.2
4,260,532	-		Sama_3620	0.37	+0.0
4,260,545	+		Sama_3620	0.39	+0.8
4,260,546	-		Sama_3620	0.39	-0.3
4,260,546	-		Sama_3620	0.39	-0.9
4,260,546	-		Sama_3620	0.39	-2.4
4,260,587	+		Sama_3620	0.43	+1.0
4,260,598	+		Sama_3620	0.44	+1.5
4,260,598	+		Sama_3620	0.44	-0.5
4,260,599	-		Sama_3620	0.44	+2.2
4,260,629	-		Sama_3620	0.48	+0.6
4,260,629	-		Sama_3620	0.48	-2.2
4,260,642	+		Sama_3620	0.49	+1.1
4,260,643	-		Sama_3620	0.49	-1.2
4,260,643	-		Sama_3620	0.49	+0.9
4,260,664	+		Sama_3620	0.52	-0.4
4,260,664	+		Sama_3620	0.52	-0.9
4,260,664	+		Sama_3620	0.52	+0.4
4,260,665	-		Sama_3620	0.52	+3.2
4,260,665	-		Sama_3620	0.52	+2.0
4,260,734	-		Sama_3620	0.59	-2.5
4,260,734	-		Sama_3620	0.59	-1.0
4,260,796	+		Sama_3620	0.66	+2.0
4,260,796	+		Sama_3620	0.66	-1.0
4,260,855	+		Sama_3620	0.73	-2.4
4,260,855	+		Sama_3620	0.73	-1.7
4,260,855	+		Sama_3620	0.73	+1.5
4,260,855	+		Sama_3620	0.73	-2.1
4,260,855	+		Sama_3620	0.73	+2.4
4,260,855	+		Sama_3620	0.73	-2.4
4,260,856	-		Sama_3620	0.73	+1.3
4,260,856	-		Sama_3620	0.73	+1.9
4,260,856	-		Sama_3620	0.73	+1.5
4,260,856	-		Sama_3620	0.73	-0.2
4,260,856	-		Sama_3620	0.73	+2.6
4,260,857	+		Sama_3620	0.73	-1.6
4,260,857	+		Sama_3620	0.73	+0.8
4,260,857	+		Sama_3620	0.73	-0.7
4,260,857	+		Sama_3620	0.73	+0.0
4,260,857	+		Sama_3620	0.73	+0.0
4,260,857	+		Sama_3620	0.73	+0.9
4,260,857	+		Sama_3620	0.73	-1.4
4,260,857	+		Sama_3620	0.73	-2.5
4,260,857	+		Sama_3620	0.73	-1.7
4,260,858	-		Sama_3620	0.73	+1.1
4,260,858	-		Sama_3620	0.73	-1.8
4,260,858	-		Sama_3620	0.73	+1.7
4,260,858	-		Sama_3620	0.73	+1.0
4,260,858	-		Sama_3620	0.73	-1.0
4,260,858	-		Sama_3620	0.73	+2.2
4,260,858	-		Sama_3620	0.73	+0.3
4,260,858	-		Sama_3620	0.73	-1.2
4,260,859	+		Sama_3620	0.73	+0.7
4,260,859	+		Sama_3620	0.73	-0.3
4,260,859	+		Sama_3620	0.73	+2.5
4,260,859	+		Sama_3620	0.73	+0.5
4,260,859	+		Sama_3620	0.73	+1.0
4,260,975	+		Sama_3620	0.86	+0.9
4,260,975	+		Sama_3620	0.86	-1.6
4,260,976	-		Sama_3620	0.86	+1.3
4,260,976	-		Sama_3620	0.86	+2.4
4,260,976	-		Sama_3620	0.86	-0.4
4,260,976	-		Sama_3620	0.86	-0.4
4,260,991	+		Sama_3620	0.88	+2.1
4,260,991	+		Sama_3620	0.88	+0.0
4,260,991	+		Sama_3620	0.88	+1.8
4,261,036	+				+1.8
4,261,036	+				-2.0
4,261,056	+				-2.0
4,261,056	+				+1.5
4,261,063	+				-0.0
4,261,063	+				-0.5
4,261,064	-				+2.0
4,261,064	-				+0.1
4,261,064	-				+2.1
4,261,064	-				+1.2
4,261,064	-				-1.7
4,261,101	+				-2.3
4,261,101	+				+0.6
4,261,101	+				-1.8
4,261,102	-				-0.0
4,261,102	-				+0.4
4,261,102	-				+0.9
4,261,102	-				-2.6
4,261,102	-				+0.2
4,261,167	+				-2.2
4,261,167	+				-1.6
4,261,167	+				+0.6
4,261,167	+				+2.0
4,261,168	-				-1.0
4,261,168	-				+1.2
4,261,374	-		Sama_3621	0.28	-0.7
4,261,427	+		Sama_3621	0.34	+0.7
4,261,427	+		Sama_3621	0.34	-1.4
4,261,427	+		Sama_3621	0.34	-1.4
4,261,427	+		Sama_3621	0.34	+1.2
4,261,433	+		Sama_3621	0.34	+0.8
4,261,479	-		Sama_3621	0.39	+2.8
4,261,479	-		Sama_3621	0.39	-2.8
4,261,515	+		Sama_3621	0.43	+1.2
4,261,516	-		Sama_3621	0.43	+1.1
4,261,529	+		Sama_3621	0.44	+1.0
4,261,529	+		Sama_3621	0.44	-0.7
4,261,529	+		Sama_3621	0.44	+1.9
4,261,529	+		Sama_3621	0.44	+0.4
4,261,529	+		Sama_3621	0.44	+3.9
4,261,529	+		Sama_3621	0.44	-0.7
4,261,530	-		Sama_3621	0.44	+2.6
4,261,559	+		Sama_3621	0.47	-1.0
4,261,559	+		Sama_3621	0.47	-2.3
4,261,560	-		Sama_3621	0.47	+0.0
4,261,560	-		Sama_3621	0.47	+0.9
4,261,560	-		Sama_3621	0.47	+0.6
4,261,593	+		Sama_3621	0.51	-2.8
4,261,593	+		Sama_3621	0.51	+0.1
4,261,594	-		Sama_3621	0.51	-3.1
4,261,594	-		Sama_3621	0.51	+2.5
4,261,629	-		Sama_3621	0.55	+1.8
4,261,678	+		Sama_3621	0.60	+2.0
4,261,678	+		Sama_3621	0.60	+2.2
4,261,679	-		Sama_3621	0.60	+2.4
4,261,682	+		Sama_3621	0.60	+1.6
4,261,682	+		Sama_3621	0.60	-2.5
4,261,682	+		Sama_3621	0.60	+1.5
4,261,682	+		Sama_3621	0.60	+0.8
4,261,682	+		Sama_3621	0.60	-0.0
4,261,682	+		Sama_3621	0.60	+1.0
4,261,683	-		Sama_3621	0.60	-0.1
4,261,701	+		Sama_3621	0.62	-2.6
4,261,701	+		Sama_3621	0.62	+0.0
4,261,701	+		Sama_3621	0.62	+3.4
4,261,701	+		Sama_3621	0.62	+1.2
4,261,701	+		Sama_3621	0.62	+2.0
4,261,701	+		Sama_3621	0.62	+2.2
4,261,701	+		Sama_3621	0.62	-3.9
4,261,701	+		Sama_3621	0.62	-0.4
4,261,701	+		Sama_3621	0.62	-1.1
4,261,701	+		Sama_3621	0.62	-0.2
4,261,701	+		Sama_3621	0.62	-3.2
4,261,702	-		Sama_3621	0.62	-1.3
4,261,702	-		Sama_3621	0.62	+1.3
4,261,702	-		Sama_3621	0.62	+1.1
4,261,702	-		Sama_3621	0.62	+4.6
4,261,702	-		Sama_3621	0.62	+0.3
4,261,702	-		Sama_3621	0.62	-2.0
4,261,702	-		Sama_3621	0.62	+2.0
4,261,717	-		Sama_3621	0.64	-2.0
4,261,768	+		Sama_3621	0.69	+1.6
4,261,768	+		Sama_3621	0.69	-0.8
4,261,768	+		Sama_3621	0.69	-2.6
4,261,768	+		Sama_3621	0.69	+2.3
4,261,768	+		Sama_3621	0.69	+0.6
4,261,769	-		Sama_3621	0.69	+0.0
4,261,769	-		Sama_3621	0.69	-0.2
4,261,769	-		Sama_3621	0.69	+0.9
4,261,769	-		Sama_3621	0.69	-0.4
4,261,769	-		Sama_3621	0.69	-0.2
4,261,769	-		Sama_3621	0.69	-2.2
4,261,769	-		Sama_3621	0.69	-0.8
4,261,769	-		Sama_3621	0.69	-2.6
4,261,769	-		Sama_3621	0.69	+1.6
4,261,773	+		Sama_3621	0.70	-1.1
4,261,815	-		Sama_3621	0.74	-0.5
4,261,834	+		Sama_3621	0.76	-1.0
4,261,834	+		Sama_3621	0.76	-1.4
4,261,834	+		Sama_3621	0.76	+2.1
4,261,834	+		Sama_3621	0.76	-0.4
4,261,835	-		Sama_3621	0.76	-0.5
4,261,835	-		Sama_3621	0.76	-0.9
4,261,835	-		Sama_3621	0.76	+1.0
4,261,835	-		Sama_3621	0.76	+1.7
4,261,835	-		Sama_3621	0.76	-0.8
4,261,835	-		Sama_3621	0.76	+0.9
4,261,909	+		Sama_3621	0.84	-0.8
4,261,909	+		Sama_3621	0.84	-0.4
4,261,909	+		Sama_3621	0.84	-0.0
4,261,910	-		Sama_3621	0.84	-2.0
4,261,910	-		Sama_3621	0.84	-0.2
4,262,010	-				-0.9
4,262,042	+				-0.7
4,262,043	-				+0.6
4,262,043	-				+1.4
4,262,084	+				+2.7
4,262,084	+				-0.4
4,262,090	+				-1.3
4,262,091	-				+0.8