Strain Fitness in Shewanella amazonensis SB2B around Sama_3375

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
4,001,942	+		Sama_3374	0.75	-2.0
4,001,943	-		Sama_3374	0.75	-1.7
4,001,943	-		Sama_3374	0.75	-0.0
4,002,003	+		Sama_3374	0.77	-1.2
4,002,004	-		Sama_3374	0.77	-2.5
4,002,041	+		Sama_3374	0.79	-4.4
4,002,042	-		Sama_3374	0.79	-2.7
4,002,110	+		Sama_3374	0.81	-1.0
4,002,158	+		Sama_3374	0.83	-0.7
4,002,206	+		Sama_3374	0.85	-1.4
4,002,206	+		Sama_3374	0.85	+1.2
4,002,206	+		Sama_3374	0.85	-1.9
4,002,207	-		Sama_3374	0.85	-1.7
4,002,207	-		Sama_3374	0.85	-1.0
4,002,207	-		Sama_3374	0.85	-1.9
4,002,270	-		Sama_3374	0.88	-1.2
4,002,304	+		Sama_3374	0.89	-2.0
4,002,356	+				-1.0
4,002,357	-				-1.0
4,002,357	-				-1.6
4,002,362	+				-1.6
4,002,362	+				-2.1
4,002,362	+				-1.0
4,002,362	+				+0.6
4,002,363	-				-1.2
4,002,412	+				-3.3
4,002,412	+				-1.0
4,002,413	-				-1.7
4,002,413	-				-0.4
4,002,465	+				-1.9
4,002,466	-				-2.1
4,002,466	-				-2.7
4,002,466	-				-1.6
4,002,466	-				-2.9
4,002,466	-				-0.0
4,002,483	+				+0.6
4,002,484	-				-1.4
4,002,484	-				+0.6
4,002,497	+				-2.1
4,002,498	-				-5.8
4,002,498	-				-3.7
4,002,498	-				-2.3
4,002,498	-				-2.0
4,002,513	+				-3.4
4,002,513	+				-2.8
4,002,513	+				-0.5
4,002,546	-				-2.7
4,002,546	-				-2.1
4,002,595	+				+0.7
4,002,595	+				+0.4
4,002,596	-				+1.6
4,002,597	+				+1.4
4,002,597	+				-0.0
4,002,642	-				-0.7
4,002,642	-				-2.1
4,002,642	-				-1.2
4,002,665	+				-0.4
4,002,665	+				-1.4
4,002,665	+				+1.4
4,002,665	+				+0.1
4,002,666	-				+1.6
4,002,666	-				-0.0
4,002,666	-				-2.2
4,002,678	+				+1.0
4,002,678	+				-0.7
4,002,690	+				+1.9
4,002,710	+				-0.0
4,002,710	+				+0.7
4,002,711	-				-2.3
4,002,711	-				-0.0
4,002,766	+				+1.2
4,002,766	+				+0.8
4,002,766	+				+1.1
4,002,766	+				-0.2
4,002,767	-				+1.2
4,002,767	-				-0.0
4,002,767	-				+0.2
4,002,767	-				-3.1
4,002,785	+				-1.2
4,002,788	-				-0.9
4,002,801	+				+1.1
4,002,801	+				-1.0
4,002,802	-				+3.2
4,002,802	-				+1.2
4,002,860	+				-0.0
4,002,861	-				-1.7
4,002,863	+				-1.4
4,002,863	+				-0.3
4,002,863	+				+2.6
4,002,863	+				-0.7
4,002,864	-				-2.7
4,002,864	-				-1.4
4,002,865	+				+0.1
4,002,865	+				-1.0
4,002,865	+				+1.4
4,002,866	-				-1.6
4,002,866	-				-1.4
4,002,866	-				-1.0
4,002,870	-				-0.7
4,002,871	+				+0.3
4,002,987	-				-2.1
4,003,044	+				-3.0
4,003,044	+				+0.3
4,003,044	+				-2.4
4,003,045	-				-1.4
4,003,045	-				-0.4
4,003,045	-				-1.4
4,003,045	-				-1.0
4,003,045	-				-2.2
4,003,045	-				-1.4
4,003,061	+				-1.2
4,003,061	+				-3.1
4,003,061	+				-0.9
4,003,062	-				-3.3
4,003,175	-		Sama_3375	0.13	-2.4
4,003,175	-		Sama_3375	0.13	-0.0
4,003,175	-		Sama_3375	0.13	-1.6
4,003,230	-		Sama_3375	0.16	-1.7
4,003,290	+		Sama_3375	0.19	-2.8
4,003,291	-		Sama_3375	0.19	-1.2
4,003,319	+		Sama_3375	0.20	-0.7
4,003,319	+		Sama_3375	0.20	-2.2
4,003,320	-		Sama_3375	0.20	-2.2
4,003,347	+		Sama_3375	0.22	-0.4
4,003,347	+		Sama_3375	0.22	-1.1
4,003,347	+		Sama_3375	0.22	-3.2
4,003,347	+		Sama_3375	0.22	-2.1
4,003,347	+		Sama_3375	0.22	-2.4
4,003,348	-		Sama_3375	0.22	-3.4
4,003,391	+		Sama_3375	0.24	-2.7
4,003,391	+		Sama_3375	0.24	-2.1
4,003,391	+		Sama_3375	0.24	-1.6
4,003,453	+		Sama_3375	0.27	-0.0
4,003,453	+		Sama_3375	0.27	-1.0
4,003,453	+		Sama_3375	0.27	-0.4
4,003,454	-		Sama_3375	0.27	-1.0
4,003,454	-		Sama_3375	0.27	-1.4
4,003,468	+		Sama_3375	0.27	-3.2
4,003,468	+		Sama_3375	0.27	-1.6
4,003,590	-		Sama_3375	0.33	-0.6
4,003,590	-		Sama_3375	0.33	-1.8
4,003,590	-		Sama_3375	0.33	-0.4
4,003,594	+		Sama_3375	0.33	+1.6
4,003,594	+		Sama_3375	0.33	+0.9
4,003,594	+		Sama_3375	0.33	-0.0
4,003,594	+		Sama_3375	0.33	-1.9
4,003,594	+		Sama_3375	0.33	+0.1
4,003,594	+		Sama_3375	0.33	-0.7
4,003,594	+		Sama_3375	0.33	-0.4
4,003,594	+		Sama_3375	0.33	-0.7
4,003,594	+		Sama_3375	0.33	-0.2
4,003,595	-		Sama_3375	0.33	-2.4
4,003,595	-		Sama_3375	0.33	-0.4
4,003,595	-		Sama_3375	0.33	-1.9
4,003,595	-		Sama_3375	0.33	-2.6
4,003,595	-		Sama_3375	0.33	-2.5
4,003,595	-		Sama_3375	0.33	-0.7
4,003,595	-		Sama_3375	0.33	-1.4
4,003,595	-		Sama_3375	0.33	+0.1
4,003,603	+		Sama_3375	0.34	-0.4
4,003,603	+		Sama_3375	0.34	-2.9
4,003,603	+		Sama_3375	0.34	-2.3
4,003,664	+		Sama_3375	0.37	-2.0
4,003,720	+		Sama_3375	0.39	-2.3
4,003,721	-		Sama_3375	0.40	+0.2
4,003,721	-		Sama_3375	0.40	-1.0
4,003,743	-		Sama_3375	0.41	-1.9
4,003,808	-		Sama_3375	0.44	-1.9
4,003,816	+		Sama_3375	0.44	-0.1
4,003,816	+		Sama_3375	0.44	-0.7
4,003,817	-		Sama_3375	0.44	-2.2
4,003,817	-		Sama_3375	0.44	+3.4
4,003,836	+		Sama_3375	0.45	-0.0
4,004,073	-		Sama_3375	0.57	-2.9
4,004,104	+		Sama_3375	0.58	-0.4
4,004,211	+		Sama_3375	0.63	-1.6
4,004,234	+		Sama_3375	0.64	+1.6
4,004,235	-		Sama_3375	0.64	-1.9
4,004,332	+		Sama_3375	0.69	-1.7
4,004,333	-		Sama_3375	0.69	-1.6
4,004,333	-		Sama_3375	0.69	-1.0
4,004,352	+		Sama_3375	0.70	-2.2
4,004,353	-		Sama_3375	0.70	-2.1
4,004,386	+		Sama_3375	0.72	-2.1
4,004,530	+		Sama_3375	0.79	-1.6
4,004,531	-		Sama_3375	0.79	-0.7
4,004,531	-		Sama_3375	0.79	-2.2
4,004,590	+		Sama_3375	0.81	-0.0
4,004,591	-		Sama_3375	0.81	-2.0
4,004,685	+		Sama_3375	0.86	-1.1
4,004,685	+		Sama_3375	0.86	-1.2
4,004,685	+		Sama_3375	0.86	-2.8
4,004,685	+		Sama_3375	0.86	-0.0
4,004,686	-		Sama_3375	0.86	+1.1
4,004,706	-		Sama_3375	0.87	-0.0
4,004,741	+		Sama_3375	0.89	-1.7
4,004,742	-		Sama_3375	0.89	-2.8
4,004,865	-				-0.7
4,004,865	-				-1.6
4,004,865	-				-2.1
4,004,929	+				-0.4
4,004,929	+				-1.4
4,004,929	+				-2.7
4,004,929	+				-1.4
4,004,961	+				-0.3
4,004,962	-				-1.9
4,004,962	-				-0.3
4,004,965	+				+0.2
4,004,965	+				-0.2
4,004,965	+				+1.0
4,004,965	+				-3.1
4,004,966	-				-0.4
4,004,966	-				+1.2
4,004,966	-				-4.3
4,004,966	-				-0.4
4,004,966	-				-1.9
4,004,966	-				-0.0
4,004,966	-				-0.9
4,004,966	-				+0.3
4,004,973	+				-2.7
4,004,983	+				-0.0
4,004,983	+				+1.4
4,004,983	+				+2.7
4,004,984	-				+0.2
4,004,984	-				+2.0
4,004,984	-				+1.6
4,004,984	-				-0.1
4,004,984	-				+0.2
4,004,987	+				-2.3
4,005,011	+				-2.2
4,005,011	+				+0.7
4,005,012	-				+0.6
4,005,186	+		Sama_3376	0.12	-0.2
4,005,187	-		Sama_3376	0.12	-1.0
4,005,187	-		Sama_3376	0.12	-1.0
4,005,187	-		Sama_3376	0.12	-1.4
4,005,187	-		Sama_3376	0.12	+1.7
4,005,194	+		Sama_3376	0.13	+0.9
4,005,194	+		Sama_3376	0.13	-2.0
4,005,194	+		Sama_3376	0.13	-1.4
4,005,195	-		Sama_3376	0.13	+1.6
4,005,346	+		Sama_3376	0.30	-2.5
4,005,346	+		Sama_3376	0.30	-0.4
4,005,346	+		Sama_3376	0.30	+2.6
4,005,346	+		Sama_3376	0.30	+0.6
4,005,346	+		Sama_3376	0.30	-1.0
4,005,346	+		Sama_3376	0.30	+0.7
4,005,347	-		Sama_3376	0.30	+1.0
4,005,347	-		Sama_3376	0.30	-1.3
4,005,347	-		Sama_3376	0.30	+0.8
4,005,347	-		Sama_3376	0.30	-1.7
4,005,347	-		Sama_3376	0.30	+0.6
4,005,347	-		Sama_3376	0.30	-0.0
4,005,363	+		Sama_3376	0.32	+2.7
4,005,364	-		Sama_3376	0.32	-1.4
4,005,378	+		Sama_3376	0.34	-1.2
4,005,378	+		Sama_3376	0.34	-0.5
4,005,378	+		Sama_3376	0.34	+1.1
4,005,378	+		Sama_3376	0.34	-1.4
4,005,378	+		Sama_3376	0.34	+0.1
4,005,379	-		Sama_3376	0.34	-0.4
4,005,379	-		Sama_3376	0.34	-2.0
4,005,379	-		Sama_3376	0.34	+2.1
4,005,379	-		Sama_3376	0.34	-0.2
4,005,379	-		Sama_3376	0.34	+0.8
4,005,379	-		Sama_3376	0.34	-1.3
4,005,379	-		Sama_3376	0.34	-1.7
4,005,379	-		Sama_3376	0.34	+2.2
4,005,431	-		Sama_3376	0.40	-0.6
4,005,505	+		Sama_3376	0.48	-2.2
4,005,506	-		Sama_3376	0.48	+2.6
4,005,506	-		Sama_3376	0.48	+0.6
4,005,512	-		Sama_3376	0.49	+1.0
4,005,602	+		Sama_3376	0.59	+1.2
4,005,602	+		Sama_3376	0.59	+0.4
4,005,602	+		Sama_3376	0.59	+0.9
4,005,603	-		Sama_3376	0.59	+0.3
4,005,603	-		Sama_3376	0.59	-1.9
4,005,603	-		Sama_3376	0.59	-0.3
4,005,603	-		Sama_3376	0.59	-1.7
4,005,603	-		Sama_3376	0.59	-1.2
4,005,607	-		Sama_3376	0.60	-2.7
4,005,620	+		Sama_3376	0.61	+1.8
4,005,629	+		Sama_3376	0.62	-0.3
4,005,630	-		Sama_3376	0.62	+3.3
4,005,638	+		Sama_3376	0.63	-1.0
4,005,638	+		Sama_3376	0.63	-2.0
4,005,638	+		Sama_3376	0.63	-0.4
4,005,639	-		Sama_3376	0.63	-2.5
4,005,639	-		Sama_3376	0.63	-0.2
4,005,639	-		Sama_3376	0.63	-1.0
4,005,647	+		Sama_3376	0.64	-1.9
4,005,647	+		Sama_3376	0.64	+0.3
4,005,647	+		Sama_3376	0.64	+1.6
4,005,647	+		Sama_3376	0.64	-0.7
4,005,647	+		Sama_3376	0.64	-1.3
4,005,648	-		Sama_3376	0.64	-1.6
4,005,648	-		Sama_3376	0.64	+2.3
4,005,648	-		Sama_3376	0.64	-2.3
4,005,648	-		Sama_3376	0.64	-0.0
4,005,648	-		Sama_3376	0.64	+1.5
4,005,660	+		Sama_3376	0.66	+1.6
4,005,660	+		Sama_3376	0.66	-3.9
4,005,660	+		Sama_3376	0.66	-1.9
4,005,661	-		Sama_3376	0.66	+1.3
4,005,661	-		Sama_3376	0.66	-0.1
4,005,687	-		Sama_3376	0.69	-1.4
4,005,739	+		Sama_3376	0.75	+0.3
4,005,739	+		Sama_3376	0.75	-1.7
4,005,739	+		Sama_3376	0.75	+1.5
4,005,740	-		Sama_3376	0.75	+0.3
4,005,740	-		Sama_3376	0.75	+0.4
4,005,740	-		Sama_3376	0.75	-1.6
4,005,813	+		Sama_3376	0.83	-0.4
4,005,813	+		Sama_3376	0.83	-1.0
4,005,813	+		Sama_3376	0.83	-1.2
4,005,813	+		Sama_3376	0.83	+1.6
4,005,813	+		Sama_3376	0.83	-0.9
4,005,813	+		Sama_3376	0.83	+1.0
4,005,813	+		Sama_3376	0.83	-1.9
4,005,813	+		Sama_3376	0.83	-2.3
4,005,814	-		Sama_3376	0.83	+0.2
4,005,814	-		Sama_3376	0.83	-2.9
4,005,814	-		Sama_3376	0.83	+1.8
4,005,814	-		Sama_3376	0.83	-1.6
4,005,814	-		Sama_3376	0.83	-0.3
4,005,814	-		Sama_3376	0.83	-1.0
4,005,839	+		Sama_3376	0.86	+0.1
4,005,840	-		Sama_3376	0.86	-0.8
4,005,840	-		Sama_3376	0.86	+0.0
4,005,840	-		Sama_3376	0.86	+2.2
4,005,894	+				+1.8
4,005,894	+				+1.8
4,005,894	+				-0.9
4,005,894	+				-1.2
4,005,895	-				+1.6
4,005,895	-				-0.0
4,005,963	-				-1.3