Strain Fitness in Shewanella amazonensis SB2B around Sama_3221

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,813,256	+		Sama_3220	0.57	-0.7
3,813,256	+		Sama_3220	0.57	-0.4
3,813,256	+		Sama_3220	0.57	-0.5
3,813,256	+		Sama_3220	0.57	-1.8
3,813,256	+		Sama_3220	0.57	-1.9
3,813,257	-		Sama_3220	0.57	-0.2
3,813,257	-		Sama_3220	0.57	-1.8
3,813,266	+		Sama_3220	0.58	-2.2
3,813,267	-		Sama_3220	0.58	+2.1
3,813,424	-		Sama_3220	0.65	-1.1
3,813,424	-		Sama_3220	0.65	-3.6
3,813,460	+		Sama_3220	0.67	-0.8
3,813,461	-		Sama_3220	0.67	-0.4
3,813,464	+		Sama_3220	0.67	+0.7
3,813,464	+		Sama_3220	0.67	-1.5
3,813,464	+		Sama_3220	0.67	+1.3
3,813,465	-		Sama_3220	0.68	+2.4
3,813,465	-		Sama_3220	0.68	-0.1
3,813,486	+		Sama_3220	0.69	+3.3
3,813,508	+		Sama_3220	0.70	+1.3
3,813,508	+		Sama_3220	0.70	-0.6
3,813,508	+		Sama_3220	0.70	+0.1
3,813,530	+		Sama_3220	0.71	+0.1
3,813,530	+		Sama_3220	0.71	-1.3
3,813,531	-		Sama_3220	0.71	+0.9
3,813,547	-		Sama_3220	0.72	-1.2
3,813,575	+		Sama_3220	0.73	-1.9
3,813,576	-		Sama_3220	0.73	-2.6
3,813,592	-		Sama_3220	0.74	-2.2
3,813,633	-		Sama_3220	0.76	-0.4
3,813,643	+		Sama_3220	0.76	+1.9
3,813,643	+		Sama_3220	0.76	-1.1
3,813,643	+		Sama_3220	0.76	-0.4
3,813,643	+		Sama_3220	0.76	-2.6
3,813,644	-		Sama_3220	0.76	-0.1
3,813,644	-		Sama_3220	0.76	+4.0
3,813,644	-		Sama_3220	0.76	-0.1
3,813,644	-		Sama_3220	0.76	-0.4
3,813,676	+		Sama_3220	0.78	-1.0
3,813,676	+		Sama_3220	0.78	-0.8
3,813,676	+		Sama_3220	0.78	-1.5
3,813,676	+		Sama_3220	0.78	+2.1
3,813,676	+		Sama_3220	0.78	+0.6
3,813,677	-		Sama_3220	0.78	+1.1
3,813,677	-		Sama_3220	0.78	+1.5
3,813,677	-		Sama_3220	0.78	+0.6
3,813,719	+		Sama_3220	0.80	+1.1
3,813,771	+		Sama_3220	0.82	-0.1
3,813,771	+		Sama_3220	0.82	+2.1
3,813,771	+		Sama_3220	0.82	+1.2
3,813,772	-		Sama_3220	0.83	-1.5
3,813,772	-		Sama_3220	0.83	+2.0
3,813,772	-		Sama_3220	0.83	-0.8
3,813,772	-		Sama_3220	0.83	-0.8
3,813,772	-		Sama_3220	0.83	+0.2
3,813,906	+		Sama_3220	0.89	+1.0
3,813,907	-		Sama_3220	0.89	-1.5
3,813,907	-		Sama_3220	0.89	-0.6
3,813,956	+				-0.1
3,813,978	-				+1.1
3,814,026	+				-1.0
3,814,026	+				+1.2
3,814,026	+				-0.5
3,814,036	+				+0.7
3,814,038	-				+2.5
3,814,112	+				+3.4
3,814,112	+				-0.8
3,814,113	-				-1.5
3,814,113	-				-3.1
3,814,114	+				-0.5
3,814,114	+				-0.5
3,814,115	-				+0.6
3,814,115	-				-1.5
3,814,115	-				+0.6
3,814,115	-				-0.0
3,814,156	+				-1.1
3,814,156	+				+0.1
3,814,157	-				+0.5
3,814,157	-				+2.3
3,814,157	-				+0.1
3,814,157	-				-1.1
3,814,157	-				-2.4
3,814,163	+				-1.9
3,814,163	+				+0.8
3,814,164	-				-0.1
3,814,164	-				+2.1
3,814,209	+				-1.3
3,814,209	+				-0.7
3,814,209	+				-0.1
3,814,210	-				-0.8
3,814,219	+				-2.3
3,814,220	-				+0.8
3,814,228	+				+3.7
3,814,228	+				+0.9
3,814,253	+				+2.3
3,814,253	+				-0.6
3,814,253	+				+0.8
3,814,253	+				+0.7
3,814,253	+				+1.4
3,814,254	-				+0.5
3,814,254	-				+1.2
3,814,295	+		Sama_3221	0.13	+0.7
3,814,295	+		Sama_3221	0.13	-1.1
3,814,295	+		Sama_3221	0.13	-2.5
3,814,295	+		Sama_3221	0.13	+0.1
3,814,296	-		Sama_3221	0.13	+1.1
3,814,398	+		Sama_3221	0.28	-2.7
3,814,399	-		Sama_3221	0.28	-1.2
3,814,399	-		Sama_3221	0.28	-0.4
3,814,407	+		Sama_3221	0.29	+1.5
3,814,407	+		Sama_3221	0.29	+0.4
3,814,408	-		Sama_3221	0.30	-1.9
3,814,413	+		Sama_3221	0.30	-0.5
3,814,413	+		Sama_3221	0.30	-1.6
3,814,414	-		Sama_3221	0.31	-0.1
3,814,414	-		Sama_3221	0.31	-0.5
3,814,451	+		Sama_3221	0.36	+3.9
3,814,451	+		Sama_3221	0.36	+0.5
3,814,451	+		Sama_3221	0.36	+3.3
3,814,452	-		Sama_3221	0.36	-1.8
3,814,452	-		Sama_3221	0.36	+1.0
3,814,452	-		Sama_3221	0.36	+0.1
3,814,452	-		Sama_3221	0.36	-2.0
3,814,452	-		Sama_3221	0.36	-0.5
3,814,502	+		Sama_3221	0.44	+0.5
3,814,502	+		Sama_3221	0.44	-2.1
3,814,502	+		Sama_3221	0.44	-2.6
3,814,502	+		Sama_3221	0.44	+1.5
3,814,502	+		Sama_3221	0.44	-2.2
3,814,502	+		Sama_3221	0.44	+0.2
3,814,502	+		Sama_3221	0.44	-2.7
3,814,502	+		Sama_3221	0.44	-3.2
3,814,502	+		Sama_3221	0.44	-0.8
3,814,502	+		Sama_3221	0.44	+0.5
3,814,503	-		Sama_3221	0.44	+2.1
3,814,503	-		Sama_3221	0.44	-0.0
3,814,503	-		Sama_3221	0.44	+0.5
3,814,546	+		Sama_3221	0.50	+1.2
3,814,547	-		Sama_3221	0.50	-0.1
3,814,615	+		Sama_3221	0.60	+2.2
3,814,615	+		Sama_3221	0.60	-1.1
3,814,615	+		Sama_3221	0.60	+0.6
3,814,615	+		Sama_3221	0.60	+1.1
3,814,616	-		Sama_3221	0.60	-2.3
3,814,616	-		Sama_3221	0.60	+2.0
3,814,616	-		Sama_3221	0.60	+2.8
3,814,616	-		Sama_3221	0.60	-0.8
3,814,616	-		Sama_3221	0.60	-0.5
3,814,616	-		Sama_3221	0.60	-2.7
3,814,616	-		Sama_3221	0.60	+3.0
3,814,661	+		Sama_3221	0.67	-0.9
3,814,661	+		Sama_3221	0.67	-1.8
3,814,661	+		Sama_3221	0.67	-2.4
3,814,661	+		Sama_3221	0.67	+1.2
3,814,661	+		Sama_3221	0.67	+1.4
3,814,661	+		Sama_3221	0.67	+1.3
3,814,661	+		Sama_3221	0.67	-0.9
3,814,661	+		Sama_3221	0.67	+1.5
3,814,661	+		Sama_3221	0.67	-0.1
3,814,661	+		Sama_3221	0.67	+3.1
3,814,661	+		Sama_3221	0.67	+0.4
3,814,661	+		Sama_3221	0.67	-1.7
3,814,661	+		Sama_3221	0.67	+1.8
3,814,661	+		Sama_3221	0.67	+0.5
3,814,662	-		Sama_3221	0.67	-1.8
3,814,662	-		Sama_3221	0.67	+0.5
3,814,662	-		Sama_3221	0.67	-2.8
3,814,662	-		Sama_3221	0.67	-1.6
3,814,662	-		Sama_3221	0.67	+1.1
3,814,662	-		Sama_3221	0.67	-1.6
3,814,662	-		Sama_3221	0.67	-1.6
3,814,662	-		Sama_3221	0.67	-0.8
3,814,662	-		Sama_3221	0.67	-1.1
3,814,662	-		Sama_3221	0.67	+0.2
3,814,662	-		Sama_3221	0.67	+0.4
3,814,662	-		Sama_3221	0.67	+2.7
3,814,662	-		Sama_3221	0.67	-2.6
3,814,662	-		Sama_3221	0.67	+0.2
3,814,668	-		Sama_3221	0.68	-1.3
3,814,709	+		Sama_3221	0.74	-0.4
3,814,709	+		Sama_3221	0.74	+1.0
3,814,726	+		Sama_3221	0.77	+1.3
3,814,726	+		Sama_3221	0.77	-0.6
3,814,726	+		Sama_3221	0.77	+1.4
3,814,727	-		Sama_3221	0.77	-1.3
3,814,812	-		Sama_3221	0.89	+1.1
3,814,862	+				+2.7
3,814,862	+				-3.1
3,814,862	+				-1.1
3,814,863	-				-0.5
3,814,863	-				+0.8
3,814,863	-				-3.0
3,814,863	-				-1.8
3,814,863	-				-1.6
3,814,863	-				-1.6
3,814,863	-				-0.9
3,814,903	+				+1.8
3,814,903	+				-3.9
3,814,950	+				+0.3
3,814,950	+				-0.4
3,814,950	+				+0.3
3,814,951	-				+1.5
3,814,982	+				-1.5
3,814,994	+				-2.3
3,815,021	+				+0.7
3,815,022	-				-0.1
3,815,022	-				+0.6
3,815,089	-				+0.1
3,815,103	+				+3.3
3,815,103	+				-1.3
3,815,103	+				+1.3
3,815,103	+				+1.8
3,815,103	+				+0.1
3,815,103	+				-1.9
3,815,103	+				-0.1
3,815,103	+				+0.8
3,815,103	+				+0.4
3,815,103	+				-3.1
3,815,103	+				-1.1
3,815,103	+				-0.0
3,815,103	+				+2.2
3,815,103	+				+1.5
3,815,103	+				+0.9
3,815,103	+				-0.1
3,815,103	+				-0.8
3,815,103	+				+0.9
3,815,103	+				+1.4
3,815,103	+				-2.1
3,815,103	+				-2.4
3,815,103	+				+0.2
3,815,103	+				-2.3
3,815,103	+				+0.7
3,815,103	+				+0.3
3,815,103	+				+1.1
3,815,103	+				+0.0
3,815,104	-				+0.6
3,815,104	-				-0.3
3,815,104	-				+0.5
3,815,104	-				-0.1
3,815,104	-				+0.8
3,815,104	-				-0.6
3,815,104	-				+0.2
3,815,104	-				+0.2
3,815,104	-				+0.9
3,815,104	-				-0.9
3,815,104	-				+0.5
3,815,104	-				+0.6
3,815,104	-				-3.9
3,815,104	-				-1.6
3,815,104	-				-1.5
3,815,104	-				-0.6
3,815,104	-				+3.0
3,815,104	-				+0.2
3,815,104	-				-1.5
3,815,104	-				-0.4
3,815,104	-				-0.9
3,815,104	-				-1.8
3,815,104	-				-0.5
3,815,105	+				+1.5
3,815,105	+				+0.2
3,815,105	+				+3.6
3,815,105	+				-1.1
3,815,105	+				+0.8
3,815,105	+				+0.4
3,815,105	+				-0.2
3,815,105	+				+1.5
3,815,105	+				+1.5
3,815,105	+				-0.1
3,815,105	+				-2.1
3,815,105	+				+4.1
3,815,105	+				+0.2
3,815,105	+				-1.1
3,815,105	+				+4.7
3,815,105	+				+0.9
3,815,105	+				-0.8
3,815,105	+				+1.2
3,815,105	+				+0.6
3,815,106	-				+1.1
3,815,106	-				+0.1
3,815,106	-				+0.4
3,815,106	-				-0.3
3,815,106	-				-0.5
3,815,106	-				+0.3
3,815,106	-				+0.1
3,815,106	-				-1.9
3,815,106	-				-0.1
3,815,106	-				-2.1
3,815,106	-				+2.7
3,815,106	-				+0.9
3,815,106	-				-1.7
3,815,106	-				-0.8
3,815,141	+		Sama_3222	0.13	-1.5
3,815,148	+		Sama_3222	0.14	+1.7
3,815,148	+		Sama_3222	0.14	+1.9
3,815,148	+		Sama_3222	0.14	+0.1
3,815,149	-		Sama_3222	0.14	-2.1
3,815,216	+		Sama_3222	0.23	-0.4
3,815,217	-		Sama_3222	0.23	-1.5
3,815,264	+		Sama_3222	0.30	-0.9
3,815,265	-		Sama_3222	0.30	-3.0
3,815,265	-		Sama_3222	0.30	-0.1
3,815,265	-		Sama_3222	0.30	-0.7
3,815,265	-		Sama_3222	0.30	+1.4
3,815,283	+		Sama_3222	0.32	-0.4
3,815,283	+		Sama_3222	0.32	-0.1
3,815,284	-		Sama_3222	0.32	-1.1
3,815,329	-		Sama_3222	0.39	+0.2
3,815,329	-		Sama_3222	0.39	+2.6
3,815,329	-		Sama_3222	0.39	+0.8
3,815,340	+		Sama_3222	0.40	-2.0
3,815,340	+		Sama_3222	0.40	+1.4
3,815,341	-		Sama_3222	0.40	+1.6
3,815,341	-		Sama_3222	0.40	-2.2
3,815,341	-		Sama_3222	0.40	-2.6
3,815,341	-		Sama_3222	0.40	+1.3
3,815,344	+		Sama_3222	0.41	-0.8
3,815,344	+		Sama_3222	0.41	+3.3
3,815,344	+		Sama_3222	0.41	-0.6
3,815,344	+		Sama_3222	0.41	+2.9
3,815,345	-		Sama_3222	0.41	+2.1
3,815,345	-		Sama_3222	0.41	-1.5
3,815,345	-		Sama_3222	0.41	-0.9
3,815,518	+		Sama_3222	0.64	-2.9
3,815,519	-		Sama_3222	0.64	+1.9
3,815,606	+		Sama_3222	0.76	-0.5
3,815,607	-		Sama_3222	0.77	-2.1
3,815,607	-		Sama_3222	0.77	-1.9
3,815,607	-		Sama_3222	0.77	-1.6
3,815,607	-		Sama_3222	0.77	+0.0
3,815,607	-		Sama_3222	0.77	+2.0
3,815,607	-		Sama_3222	0.77	+0.9
3,815,649	+		Sama_3222	0.82	-0.5
3,815,650	-		Sama_3222	0.82	-0.8
3,815,650	-		Sama_3222	0.82	+2.3
3,815,650	-		Sama_3222	0.82	-1.9
3,815,650	-		Sama_3222	0.82	+0.4
3,815,650	-		Sama_3222	0.82	-1.5
3,815,650	-		Sama_3222	0.82	-1.3
3,815,743	+				+0.7
3,815,743	+				+0.6
3,815,744	-				+0.8
3,815,744	-				+0.7
3,815,744	-				+0.8
3,815,744	-				-2.9
3,815,744	-				-2.2
3,815,748	+				-0.1
3,815,748	+				+0.1
3,815,748	+				+0.9
3,815,748	+				+2.1
3,815,748	+				-0.4
3,815,748	+				+1.7
3,815,748	+				+2.5
3,815,748	+				-1.1
3,815,748	+				-1.1
3,815,748	+				-2.3
3,815,748	+				+1.3
3,815,748	+				-1.2
3,815,748	+				+0.0
3,815,748	+				-0.1
3,815,749	-				-0.5
3,815,749	-				+0.6
3,815,749	-				-2.1
3,815,749	-				-0.3
3,815,749	-				-2.0
3,815,749	-				-1.1
3,815,831	+				+1.3
3,815,832	-				+1.6
3,815,832	-				+1.1
3,815,841	-				+1.7
3,815,841	-				+1.9