Strain Fitness in Shewanella amazonensis SB2B around Sama_3066

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,642,411	+				+1.5
3,642,412	-				+1.4
3,642,438	+				-0.1
3,642,439	-				+1.8
3,642,439	-				-1.1
3,642,439	-				+0.6
3,642,479	+				-0.5
3,642,480	-				-2.1
3,642,494	+				-2.2
3,642,505	+				-0.5
3,642,505	+				+2.6
3,642,511	+				-3.0
3,642,511	+				+0.4
3,642,512	-				-2.2
3,642,512	-				+0.5
3,642,547	+				+0.0
3,642,547	+				-1.0
3,642,547	+				-0.0
3,642,571	+				+1.0
3,642,582	+		Sama_3065	0.10	+3.6
3,642,583	-		Sama_3065	0.10	-0.8
3,642,645	-		Sama_3065	0.18	+1.9
3,642,685	+		Sama_3065	0.24	+1.5
3,642,686	-		Sama_3065	0.24	+1.2
3,642,686	-		Sama_3065	0.24	-2.8
3,642,686	-		Sama_3065	0.24	-0.2
3,642,687	+		Sama_3065	0.24	-2.2
3,642,687	+		Sama_3065	0.24	+2.8
3,642,687	+		Sama_3065	0.24	-0.2
3,642,687	+		Sama_3065	0.24	-0.5
3,642,687	+		Sama_3065	0.24	-0.3
3,642,687	+		Sama_3065	0.24	-2.0
3,642,687	+		Sama_3065	0.24	-1.1
3,642,687	+		Sama_3065	0.24	-0.2
3,642,687	+		Sama_3065	0.24	+3.0
3,642,687	+		Sama_3065	0.24	-2.5
3,642,688	-		Sama_3065	0.24	+1.2
3,642,688	-		Sama_3065	0.24	+0.8
3,642,688	-		Sama_3065	0.24	-0.3
3,642,688	-		Sama_3065	0.24	+0.5
3,642,688	-		Sama_3065	0.24	-1.3
3,642,688	-		Sama_3065	0.24	+0.6
3,642,688	-		Sama_3065	0.24	+2.2
3,642,688	-		Sama_3065	0.24	+0.8
3,642,688	-		Sama_3065	0.24	-2.4
3,642,688	-		Sama_3065	0.24	-0.6
3,642,729	+		Sama_3065	0.30	+2.3
3,642,729	+		Sama_3065	0.30	+0.6
3,642,729	+		Sama_3065	0.30	-0.8
3,642,730	-		Sama_3065	0.30	-0.1
3,642,768	+		Sama_3065	0.35	+1.5
3,642,768	+		Sama_3065	0.35	+0.7
3,642,768	+		Sama_3065	0.35	-0.5
3,642,769	-		Sama_3065	0.35	-2.1
3,642,769	-		Sama_3065	0.35	+0.5
3,642,792	+		Sama_3065	0.38	+0.8
3,642,792	+		Sama_3065	0.38	+0.2
3,642,792	+		Sama_3065	0.38	-1.7
3,642,792	+		Sama_3065	0.38	+1.1
3,642,792	+		Sama_3065	0.38	-1.9
3,642,793	-		Sama_3065	0.38	-0.1
3,642,810	+		Sama_3065	0.41	-2.1
3,642,810	+		Sama_3065	0.41	+0.7
3,642,833	+		Sama_3065	0.44	+3.6
3,642,833	+		Sama_3065	0.44	-0.2
3,642,833	+		Sama_3065	0.44	-0.1
3,642,833	+		Sama_3065	0.44	+0.5
3,642,834	-		Sama_3065	0.44	-0.5
3,642,855	+		Sama_3065	0.47	-0.0
3,642,855	+		Sama_3065	0.47	+1.0
3,642,856	-		Sama_3065	0.47	-1.3
3,642,867	+		Sama_3065	0.48	-0.1
3,642,899	+		Sama_3065	0.52	+0.7
3,642,899	+		Sama_3065	0.52	-0.8
3,642,899	+		Sama_3065	0.52	+2.0
3,642,899	+		Sama_3065	0.52	-1.1
3,642,899	+		Sama_3065	0.52	-1.3
3,642,900	-		Sama_3065	0.53	+0.7
3,642,900	-		Sama_3065	0.53	-1.1
3,642,909	+		Sama_3065	0.54	-1.1
3,642,923	+		Sama_3065	0.56	+0.1
3,642,924	-		Sama_3065	0.56	-0.4
3,642,951	+		Sama_3065	0.59	-0.1
3,642,951	+		Sama_3065	0.59	+1.2
3,642,952	-		Sama_3065	0.60	-1.4
3,642,952	-		Sama_3065	0.60	+2.7
3,643,012	+		Sama_3065	0.68	-0.0
3,643,012	+		Sama_3065	0.68	+0.4
3,643,013	-		Sama_3065	0.68	+1.6
3,643,050	+		Sama_3065	0.73	+0.9
3,643,050	+		Sama_3065	0.73	+0.9
3,643,050	+		Sama_3065	0.73	+1.5
3,643,051	-		Sama_3065	0.73	+1.2
3,643,051	-		Sama_3065	0.73	-2.0
3,643,051	-		Sama_3065	0.73	-2.2
3,643,097	+		Sama_3065	0.79	-0.2
3,643,098	-		Sama_3065	0.79	+3.3
3,643,115	+		Sama_3065	0.81	-0.5
3,643,122	+		Sama_3065	0.82	-0.1
3,643,122	+		Sama_3065	0.82	+1.5
3,643,122	+		Sama_3065	0.82	+1.6
3,643,123	-		Sama_3065	0.82	+0.9
3,643,131	-		Sama_3065	0.84	+0.3
3,643,177	-		Sama_3065	0.90	-1.7
3,643,239	+				-0.7
3,643,239	+				+2.4
3,643,239	+				+4.3
3,643,240	-				-2.6
3,643,240	-				+0.5
3,643,240	-				-0.3
3,643,240	-				+0.8
3,643,240	-				-1.8
3,643,240	-				-0.3
3,643,240	-				-0.0
3,643,240	-				-2.4
3,643,240	-				+1.4
3,643,240	-				+1.4
3,643,240	-				+0.8
3,643,240	-				-0.1
3,643,241	+				-1.2
3,643,242	-				+1.5
3,643,242	-				-0.4
3,643,242	-				+1.5
3,643,242	-				+0.3
3,643,251	+				-1.1
3,643,251	+				-0.2
3,643,258	+				-1.1
3,643,258	+				+0.2
3,643,282	-				+1.5
3,643,311	+				+1.4
3,643,312	-				-2.1
3,643,341	+				-2.0
3,643,341	+				-2.5
3,643,424	-		Sama_3066	0.12	-2.5
3,643,460	+		Sama_3066	0.17	-1.9
3,643,527	+		Sama_3066	0.26	+0.5
3,643,528	-		Sama_3066	0.26	-1.3
3,643,528	-		Sama_3066	0.26	-2.0
3,643,658	-		Sama_3066	0.44	+1.7
3,643,658	-		Sama_3066	0.44	+0.5
3,643,700	+		Sama_3066	0.50	+1.9
3,643,700	+		Sama_3066	0.50	-0.4
3,643,701	-		Sama_3066	0.50	-1.5
3,643,733	-		Sama_3066	0.54	+1.7
3,643,784	+		Sama_3066	0.61	-1.7
3,643,784	+		Sama_3066	0.61	-0.1
3,643,864	+		Sama_3066	0.72	-0.9
3,643,865	-		Sama_3066	0.73	-0.9
3,643,865	-		Sama_3066	0.73	-1.7
3,643,865	-		Sama_3066	0.73	-0.5
3,643,865	-		Sama_3066	0.73	+0.5
3,644,030	+				-0.1
3,644,031	-				-1.1
3,644,082	+				+1.7
3,644,095	+				-0.9
3,644,104	+				+0.3
3,644,466	+		Sama_3067	0.16	-0.1
3,644,466	+		Sama_3067	0.16	+0.5
3,644,467	-		Sama_3067	0.16	+0.2
3,644,467	-		Sama_3067	0.16	-1.8
3,644,507	-		Sama_3067	0.18	-0.9
3,644,593	+		Sama_3067	0.21	-2.7
3,644,593	+		Sama_3067	0.21	-2.1
3,644,594	-		Sama_3067	0.21	+0.3
3,644,605	+		Sama_3067	0.22	+0.7
3,644,605	+		Sama_3067	0.22	-0.9
3,644,605	+		Sama_3067	0.22	-1.1
3,644,605	+		Sama_3067	0.22	+1.5
3,644,605	+		Sama_3067	0.22	-0.5
3,644,606	-		Sama_3067	0.22	-2.5
3,644,606	-		Sama_3067	0.22	-2.1
3,644,606	-		Sama_3067	0.22	+1.0
3,644,606	-		Sama_3067	0.22	-0.3
3,644,606	-		Sama_3067	0.22	+2.0
3,644,698	-		Sama_3067	0.25	-0.0
3,644,698	-		Sama_3067	0.25	-0.1
3,644,703	+		Sama_3067	0.26	+2.4
3,644,704	-		Sama_3067	0.26	-1.1
3,644,813	-		Sama_3067	0.30	+0.1
3,644,823	+		Sama_3067	0.31	-1.7
3,644,824	-		Sama_3067	0.31	+1.1
3,644,824	-		Sama_3067	0.31	+0.5
3,644,824	-		Sama_3067	0.31	-1.3
3,644,824	-		Sama_3067	0.31	+0.5
3,644,868	+		Sama_3067	0.32	-1.9
3,644,868	+		Sama_3067	0.32	-1.3
3,644,869	-		Sama_3067	0.32	+2.2
3,644,956	-		Sama_3067	0.36	+0.2
3,644,956	-		Sama_3067	0.36	-0.1
3,645,019	+		Sama_3067	0.39	+0.1
3,645,020	-		Sama_3067	0.39	+0.5
3,645,020	-		Sama_3067	0.39	+1.0