Strain Fitness in Shewanella amazonensis SB2B around Sama_2971

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,536,752	+		Sama_2970	0.45	+1.4
3,536,753	-		Sama_2970	0.45	+1.4
3,536,753	-		Sama_2970	0.45	-1.4
3,536,821	+		Sama_2970	0.49	-0.9
3,536,821	+		Sama_2970	0.49	-2.3
3,536,821	+		Sama_2970	0.49	+2.2
3,536,821	+		Sama_2970	0.49	-0.2
3,536,821	+		Sama_2970	0.49	+0.3
3,536,821	+		Sama_2970	0.49	-2.1
3,536,822	-		Sama_2970	0.49	+1.4
3,536,822	-		Sama_2970	0.49	-1.4
3,536,825	+		Sama_2970	0.49	-1.7
3,536,825	+		Sama_2970	0.49	-0.3
3,536,825	+		Sama_2970	0.49	-1.6
3,536,825	+		Sama_2970	0.49	+0.1
3,536,825	+		Sama_2970	0.49	+1.1
3,536,825	+		Sama_2970	0.49	-0.6
3,536,825	+		Sama_2970	0.49	-0.1
3,536,826	-		Sama_2970	0.49	-0.9
3,536,826	-		Sama_2970	0.49	-1.1
3,536,826	-		Sama_2970	0.49	-2.6
3,536,826	-		Sama_2970	0.49	+0.4
3,536,826	-		Sama_2970	0.49	+0.3
3,536,826	-		Sama_2970	0.49	-0.6
3,536,826	-		Sama_2970	0.49	+0.2
3,536,826	-		Sama_2970	0.49	-2.0
3,536,826	-		Sama_2970	0.49	-1.9
3,536,826	-		Sama_2970	0.49	-2.1
3,536,826	-		Sama_2970	0.49	-1.9
3,536,826	-		Sama_2970	0.49	-3.4
3,536,826	-		Sama_2970	0.49	-1.9
3,536,828	+		Sama_2970	0.50	-0.3
3,536,829	-		Sama_2970	0.50	-0.1
3,536,829	-		Sama_2970	0.50	+1.3
3,536,923	+		Sama_2970	0.55	-0.8
3,536,924	-		Sama_2970	0.55	-0.3
3,536,924	-		Sama_2970	0.55	+2.8
3,536,924	-		Sama_2970	0.55	-2.4
3,536,924	-		Sama_2970	0.55	-0.9
3,536,924	-		Sama_2970	0.55	+1.4
3,536,925	+		Sama_2970	0.55	-2.0
3,536,925	+		Sama_2970	0.55	+0.9
3,536,926	-		Sama_2970	0.55	-1.6
3,536,926	-		Sama_2970	0.55	-0.4
3,536,931	+		Sama_2970	0.56	-1.4
3,536,931	+		Sama_2970	0.56	+2.2
3,536,932	-		Sama_2970	0.56	+2.0
3,536,932	-		Sama_2970	0.56	+1.7
3,536,932	-		Sama_2970	0.56	-1.4
3,536,932	-		Sama_2970	0.56	-2.7
3,536,932	-		Sama_2970	0.56	+1.7
3,536,957	+		Sama_2970	0.57	-1.1
3,537,058	+		Sama_2970	0.63	+0.4
3,537,058	+		Sama_2970	0.63	+1.8
3,537,058	+		Sama_2970	0.63	-1.9
3,537,058	+		Sama_2970	0.63	-1.6
3,537,058	+		Sama_2970	0.63	-2.3
3,537,058	+		Sama_2970	0.63	+1.0
3,537,059	-		Sama_2970	0.63	-1.1
3,537,060	+		Sama_2970	0.63	-1.9
3,537,060	+		Sama_2970	0.63	-1.4
3,537,060	+		Sama_2970	0.63	-2.5
3,537,082	+		Sama_2970	0.65	+2.7
3,537,083	-		Sama_2970	0.65	+0.7
3,537,083	-		Sama_2970	0.65	+2.3
3,537,099	-		Sama_2970	0.66	-2.9
3,537,099	-		Sama_2970	0.66	-2.1
3,537,099	-		Sama_2970	0.66	+2.2
3,537,213	+		Sama_2970	0.73	+0.3
3,537,300	-		Sama_2970	0.78	-2.6
3,537,300	-		Sama_2970	0.78	+0.4
3,537,300	-		Sama_2970	0.78	-0.6
3,537,359	+		Sama_2970	0.81	-0.7
3,537,359	+		Sama_2970	0.81	-0.9
3,537,359	+		Sama_2970	0.81	-0.1
3,537,360	-		Sama_2970	0.81	-2.0
3,537,360	-		Sama_2970	0.81	+2.9
3,537,383	+		Sama_2970	0.83	+0.2
3,537,383	+		Sama_2970	0.83	+0.1
3,537,383	+		Sama_2970	0.83	-0.0
3,537,383	+		Sama_2970	0.83	-1.6
3,537,384	-		Sama_2970	0.83	+2.0
3,537,384	-		Sama_2970	0.83	+1.4
3,537,384	-		Sama_2970	0.83	+1.7
3,537,384	-		Sama_2970	0.83	+0.8
3,537,384	-		Sama_2970	0.83	+0.3
3,537,384	-		Sama_2970	0.83	-0.6
3,537,384	-		Sama_2970	0.83	-0.1
3,537,384	-		Sama_2970	0.83	-0.8
3,537,384	-		Sama_2970	0.83	-2.0
3,537,389	-		Sama_2970	0.83	-1.2
3,537,481	-		Sama_2970	0.89	-1.4
3,537,492	+		Sama_2970	0.89	-2.0
3,537,502	-		Sama_2970	0.90	+0.2
3,537,504	+		Sama_2970	0.90	-1.9
3,537,543	+				-1.5
3,537,600	+				-0.4
3,537,601	-				-0.7
3,537,628	+				-2.9
3,537,628	+				+0.1
3,537,628	+				+0.7
3,537,628	+				-0.6
3,537,628	+				+1.3
3,537,629	-				-2.0
3,537,629	-				-0.3
3,537,629	-				-1.4
3,537,629	-				+0.4
3,537,629	-				+0.3
3,537,629	-				-0.7
3,537,629	-				-0.8
3,537,670	+				-0.2
3,537,689	-				-0.6
3,537,777	+				-0.8
3,537,883	+				-0.3
3,537,883	+				+1.1
3,538,021	-		Sama_2971	0.12	+1.4
3,538,021	-		Sama_2971	0.12	-1.1
3,538,071	-		Sama_2971	0.14	-1.9
3,538,139	+		Sama_2971	0.17	-0.9
3,538,139	+		Sama_2971	0.17	+0.8
3,538,140	-		Sama_2971	0.17	-3.3
3,538,140	-		Sama_2971	0.17	-1.6
3,538,168	+		Sama_2971	0.18	+0.9
3,538,168	+		Sama_2971	0.18	-0.1
3,538,168	+		Sama_2971	0.18	-2.3
3,538,168	+		Sama_2971	0.18	-1.4
3,538,169	-		Sama_2971	0.18	-1.4
3,538,180	+		Sama_2971	0.19	-0.1
3,538,181	-		Sama_2971	0.19	-1.9
3,538,272	+		Sama_2971	0.22	-0.9
3,538,272	+		Sama_2971	0.22	+1.8
3,538,272	+		Sama_2971	0.22	-1.1
3,538,373	+		Sama_2971	0.27	-2.4
3,538,373	+		Sama_2971	0.27	-3.6
3,538,412	+		Sama_2971	0.28	+0.4
3,538,412	+		Sama_2971	0.28	-0.6
3,538,412	+		Sama_2971	0.28	-2.8
3,538,413	-		Sama_2971	0.28	-1.4
3,538,413	-		Sama_2971	0.28	-2.3
3,538,474	+		Sama_2971	0.31	-1.9
3,538,474	+		Sama_2971	0.31	-1.7
3,538,474	+		Sama_2971	0.31	-0.1
3,538,474	+		Sama_2971	0.31	-2.6
3,538,475	-		Sama_2971	0.31	-1.3
3,538,475	-		Sama_2971	0.31	-0.1
3,538,475	-		Sama_2971	0.31	-2.4
3,538,475	-		Sama_2971	0.31	-2.3
3,538,519	+		Sama_2971	0.33	-2.1
3,538,519	+		Sama_2971	0.33	-2.0
3,538,519	+		Sama_2971	0.33	-0.7
3,538,520	-		Sama_2971	0.33	-2.8
3,538,520	-		Sama_2971	0.33	-1.0
3,538,597	+		Sama_2971	0.36	-2.8
3,538,597	+		Sama_2971	0.36	-0.1
3,538,597	+		Sama_2971	0.36	+0.9
3,538,597	+		Sama_2971	0.36	+1.9
3,538,597	+		Sama_2971	0.36	+0.1
3,538,598	-		Sama_2971	0.36	-1.1
3,538,598	-		Sama_2971	0.36	-0.6
3,538,598	-		Sama_2971	0.36	-0.9
3,538,598	-		Sama_2971	0.36	+1.1
3,538,622	+		Sama_2971	0.37	+0.8
3,538,622	+		Sama_2971	0.37	-1.1
3,538,623	-		Sama_2971	0.37	-1.6
3,538,623	-		Sama_2971	0.37	-0.6
3,538,623	-		Sama_2971	0.37	-0.0
3,538,623	-		Sama_2971	0.37	-1.6
3,538,624	+		Sama_2971	0.37	-1.6
3,538,624	+		Sama_2971	0.37	-1.4
3,538,624	+		Sama_2971	0.37	-1.3
3,538,624	+		Sama_2971	0.37	+0.6
3,538,624	+		Sama_2971	0.37	-2.7
3,538,624	+		Sama_2971	0.37	-0.6
3,538,624	+		Sama_2971	0.37	+0.6
3,538,624	+		Sama_2971	0.37	-2.4
3,538,624	+		Sama_2971	0.37	-1.3
3,538,625	-		Sama_2971	0.38	-0.9
3,538,625	-		Sama_2971	0.38	-1.7
3,538,625	-		Sama_2971	0.38	-0.1
3,538,625	-		Sama_2971	0.38	+0.1
3,538,650	+		Sama_2971	0.39	-0.6
3,538,650	+		Sama_2971	0.39	+1.3
3,538,651	-		Sama_2971	0.39	+1.6
3,538,681	+		Sama_2971	0.40	-1.0
3,538,682	-		Sama_2971	0.40	-0.6
3,538,682	-		Sama_2971	0.40	-1.7
3,538,788	-		Sama_2971	0.44	-2.1
3,538,852	+		Sama_2971	0.47	-0.3
3,538,852	+		Sama_2971	0.47	-1.7
3,538,852	+		Sama_2971	0.47	-0.9
3,538,853	-		Sama_2971	0.47	+1.0
3,538,853	-		Sama_2971	0.47	+2.0
3,538,853	-		Sama_2971	0.47	-0.6
3,538,925	-		Sama_2971	0.50	+1.0
3,538,968	+		Sama_2971	0.52	-0.3
3,539,092	+		Sama_2971	0.57	-0.9
3,539,092	+		Sama_2971	0.57	-1.6
3,539,092	+		Sama_2971	0.57	-0.9
3,539,092	+		Sama_2971	0.57	-0.1
3,539,093	-		Sama_2971	0.58	-2.6
3,539,093	-		Sama_2971	0.58	+1.4
3,539,095	+		Sama_2971	0.58	-2.4
3,539,095	+		Sama_2971	0.58	+0.1
3,539,096	-		Sama_2971	0.58	-1.6
3,539,096	-		Sama_2971	0.58	-1.7
3,539,096	-		Sama_2971	0.58	-0.9
3,539,096	-		Sama_2971	0.58	-0.4
3,539,096	-		Sama_2971	0.58	-2.3
3,539,096	-		Sama_2971	0.58	-1.6
3,539,096	-		Sama_2971	0.58	+1.8
3,539,096	-		Sama_2971	0.58	-0.3
3,539,096	-		Sama_2971	0.58	+0.1
3,539,171	-		Sama_2971	0.61	-0.6
3,539,193	-		Sama_2971	0.62	-1.9
3,539,227	+		Sama_2971	0.63	-1.4
3,539,227	+		Sama_2971	0.63	-2.4
3,539,228	-		Sama_2971	0.63	+0.2
3,539,228	-		Sama_2971	0.63	-1.7
3,539,228	-		Sama_2971	0.63	-0.4
3,539,228	-		Sama_2971	0.63	+1.1
3,539,228	-		Sama_2971	0.63	-0.9
3,539,242	+		Sama_2971	0.64	-1.0
3,539,242	+		Sama_2971	0.64	+0.4
3,539,242	+		Sama_2971	0.64	-1.7
3,539,269	+		Sama_2971	0.65	-0.8
3,539,313	-		Sama_2971	0.67	-2.1
3,539,372	+		Sama_2971	0.69	-1.3
3,539,405	+		Sama_2971	0.71	-1.3
3,539,406	-		Sama_2971	0.71	+2.2
3,539,627	+		Sama_2971	0.80	-1.9
3,539,628	-		Sama_2971	0.80	-0.1
3,539,763	+		Sama_2971	0.86	+0.8
3,539,764	-		Sama_2971	0.86	-2.6
3,539,764	-		Sama_2971	0.86	+0.4
3,539,773	+		Sama_2971	0.87	-1.1
3,539,831	-		Sama_2971	0.89	-1.1
3,539,852	-		Sama_2971	0.90	-1.7
3,539,914	+				-1.5
3,539,923	+				-0.1
3,539,977	-				-2.1
3,539,999	+				-2.0
3,540,086	+				+0.0
3,540,086	+				-1.1
3,540,086	+				-1.1
3,540,087	-				-2.0
3,540,087	-				+0.2
3,540,129	-				-2.7
3,540,204	+				-0.1
3,540,204	+				+1.0
3,540,205	-				+2.4
3,540,205	-				-0.5
3,540,205	-				+0.2
3,540,205	-				-1.4
3,540,214	+				+0.5
3,540,315	+				-0.9
3,540,315	+				-1.9
3,540,315	+				-1.7
3,540,337	+				-0.9
3,540,337	+				-0.5
3,540,337	+				-1.1
3,540,337	+				+1.9
3,540,338	-				-0.7
3,540,338	-				+1.9
3,540,338	-				+0.6
3,540,338	-				+0.9
3,540,417	-		Sama_2972	0.13	+1.4
3,540,417	-		Sama_2972	0.13	+0.6
3,540,421	+		Sama_2972	0.13	+2.1
3,540,421	+		Sama_2972	0.13	-0.4
3,540,422	-		Sama_2972	0.13	+0.5
3,540,506	+		Sama_2972	0.16	+1.1
3,540,506	+		Sama_2972	0.16	+1.5
3,540,539	-		Sama_2972	0.17	+2.1
3,540,699	+		Sama_2972	0.24	+0.5
3,540,841	-		Sama_2972	0.29	+0.5
3,541,005	+		Sama_2972	0.36	-1.5
3,541,006	-		Sama_2972	0.36	-2.8
3,541,006	-		Sama_2972	0.36	+0.8