Strain Fitness in Shewanella amazonensis SB2B around Sama_2937

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,489,015	+		Sama_2935	0.81	+0.8
3,489,016	-		Sama_2935	0.81	+0.4
3,489,016	-		Sama_2935	0.81	+1.5
3,489,016	-		Sama_2935	0.81	+3.4
3,489,028	-		Sama_2935	0.82	+0.9
3,489,103	-		Sama_2935	0.88	+2.7
3,489,127	+		Sama_2935	0.90	+1.5
3,489,128	-		Sama_2935	0.90	-1.6
3,489,193	-				+2.4
3,489,193	-				+0.6
3,489,197	+				+1.3
3,489,197	+				+0.4
3,489,197	+				+0.3
3,489,197	+				+0.3
3,489,198	-				-1.9
3,489,198	-				+1.1
3,489,198	-				+3.9
3,489,198	-				-0.6
3,489,198	-				+2.7
3,489,198	-				+2.6
3,489,206	+				-0.2
3,489,207	-				+0.8
3,489,207	-				+2.6
3,489,207	-				-0.2
3,489,207	-				+2.2
3,489,207	-				+1.6
3,489,216	+				+1.2
3,489,217	-				+1.0
3,489,217	-				+2.0
3,489,295	+				+2.2
3,489,296	-				+2.0
3,489,296	-				+0.2
3,489,296	-				+2.1
3,489,320	+				+0.4
3,489,320	+				+1.6
3,489,321	-				+0.7
3,489,321	-				-0.1
3,489,321	-				-1.2
3,489,355	+				+1.6
3,489,355	+				-0.8
3,489,355	+				-0.9
3,489,355	+				+3.2
3,489,355	+				-1.2
3,489,355	+				+3.2
3,489,355	+				+1.4
3,489,355	+				+4.5
3,489,355	+				-0.7
3,489,355	+				+1.5
3,489,355	+				+0.3
3,489,356	-				+1.7
3,489,356	-				-0.4
3,489,356	-				+2.4
3,489,356	-				+3.0
3,489,356	-				+1.2
3,489,356	-				-1.4
3,489,356	-				+1.3
3,489,356	-				+0.9
3,489,356	-				+0.7
3,489,406	+		Sama_2936	0.16	-0.7
3,489,406	+		Sama_2936	0.16	+2.0
3,489,406	+		Sama_2936	0.16	+3.1
3,489,406	+		Sama_2936	0.16	+1.3
3,489,406	+		Sama_2936	0.16	+1.4
3,489,406	+		Sama_2936	0.16	+1.8
3,489,406	+		Sama_2936	0.16	+1.9
3,489,406	+		Sama_2936	0.16	+1.3
3,489,406	+		Sama_2936	0.16	+2.7
3,489,406	+		Sama_2936	0.16	+2.9
3,489,406	+		Sama_2936	0.16	+0.8
3,489,407	-		Sama_2936	0.16	+0.9
3,489,407	-		Sama_2936	0.16	+2.9
3,489,407	-		Sama_2936	0.16	+1.3
3,489,407	-		Sama_2936	0.16	-0.1
3,489,407	-		Sama_2936	0.16	+1.4
3,489,407	-		Sama_2936	0.16	+1.7
3,489,407	-		Sama_2936	0.16	+0.9
3,489,407	-		Sama_2936	0.16	+4.3
3,489,407	-		Sama_2936	0.16	+1.1
3,489,415	-		Sama_2936	0.17	+1.2
3,489,421	+		Sama_2936	0.18	+0.8
3,489,438	+		Sama_2936	0.20	+1.8
3,489,438	+		Sama_2936	0.20	-2.6
3,489,439	-		Sama_2936	0.21	-1.0
3,489,442	+		Sama_2936	0.21	+2.8
3,489,442	+		Sama_2936	0.21	+1.9
3,489,442	+		Sama_2936	0.21	+1.5
3,489,442	+		Sama_2936	0.21	+0.9
3,489,442	+		Sama_2936	0.21	+3.0
3,489,442	+		Sama_2936	0.21	+0.1
3,489,443	-		Sama_2936	0.21	-0.1
3,489,443	-		Sama_2936	0.21	+2.3
3,489,443	-		Sama_2936	0.21	+1.9
3,489,443	-		Sama_2936	0.21	+1.2
3,489,470	+		Sama_2936	0.25	+0.8
3,489,470	+		Sama_2936	0.25	+3.8
3,489,471	-		Sama_2936	0.25	+2.2
3,489,491	+		Sama_2936	0.28	+2.8
3,489,491	+		Sama_2936	0.28	+1.7
3,489,491	+		Sama_2936	0.28	+0.7
3,489,491	+		Sama_2936	0.28	+1.0
3,489,492	-		Sama_2936	0.28	+1.1
3,489,492	-		Sama_2936	0.28	+1.2
3,489,492	-		Sama_2936	0.28	+1.5
3,489,492	-		Sama_2936	0.28	+1.8
3,489,497	+		Sama_2936	0.29	+1.0
3,489,497	+		Sama_2936	0.29	+2.1
3,489,497	+		Sama_2936	0.29	+0.5
3,489,497	+		Sama_2936	0.29	+1.4
3,489,498	-		Sama_2936	0.29	+2.1
3,489,498	-		Sama_2936	0.29	+2.3
3,489,498	-		Sama_2936	0.29	+0.9
3,489,498	-		Sama_2936	0.29	+2.0
3,489,498	-		Sama_2936	0.29	+2.5
3,489,513	+		Sama_2936	0.31	+1.3
3,489,514	-		Sama_2936	0.31	-0.6
3,489,537	+		Sama_2936	0.35	-1.8
3,489,566	+		Sama_2936	0.39	+1.7
3,489,566	+		Sama_2936	0.39	+1.0
3,489,566	+		Sama_2936	0.39	-0.1
3,489,566	+		Sama_2936	0.39	-1.1
3,489,566	+		Sama_2936	0.39	+1.8
3,489,567	-		Sama_2936	0.39	-2.5
3,489,567	-		Sama_2936	0.39	+0.3
3,489,567	-		Sama_2936	0.39	-0.9
3,489,567	-		Sama_2936	0.39	+2.0
3,489,567	-		Sama_2936	0.39	+1.8
3,489,568	+		Sama_2936	0.39	+4.1
3,489,584	+		Sama_2936	0.42	+0.8
3,489,585	-		Sama_2936	0.42	+1.5
3,489,585	-		Sama_2936	0.42	+4.7
3,489,636	+		Sama_2936	0.49	-1.8
3,489,636	+		Sama_2936	0.49	+1.2
3,489,636	+		Sama_2936	0.49	+1.5
3,489,636	+		Sama_2936	0.49	+2.1
3,489,636	+		Sama_2936	0.49	+0.4
3,489,636	+		Sama_2936	0.49	+1.0
3,489,636	+		Sama_2936	0.49	-1.9
3,489,636	+		Sama_2936	0.49	+2.4
3,489,636	+		Sama_2936	0.49	+1.9
3,489,636	+		Sama_2936	0.49	+0.4
3,489,636	+		Sama_2936	0.49	-0.5
3,489,636	+		Sama_2936	0.49	-0.3
3,489,636	+		Sama_2936	0.49	+0.9
3,489,636	+		Sama_2936	0.49	+2.0
3,489,636	+		Sama_2936	0.49	+2.6
3,489,636	+		Sama_2936	0.49	+1.6
3,489,636	+		Sama_2936	0.49	+1.3
3,489,636	+		Sama_2936	0.49	+1.5
3,489,637	-		Sama_2936	0.49	+1.5
3,489,637	-		Sama_2936	0.49	+2.5
3,489,637	-		Sama_2936	0.49	+1.6
3,489,637	-		Sama_2936	0.49	+1.6
3,489,637	-		Sama_2936	0.49	+1.7
3,489,637	-		Sama_2936	0.49	+2.0
3,489,637	-		Sama_2936	0.49	-0.6
3,489,637	-		Sama_2936	0.49	+1.7
3,489,637	-		Sama_2936	0.49	-2.1
3,489,637	-		Sama_2936	0.49	+1.6
3,489,637	-		Sama_2936	0.49	+2.7
3,489,637	-		Sama_2936	0.49	+2.8
3,489,637	-		Sama_2936	0.49	-1.8
3,489,637	-		Sama_2936	0.49	+2.4
3,489,638	+		Sama_2936	0.49	+2.3
3,489,638	+		Sama_2936	0.49	-1.7
3,489,638	+		Sama_2936	0.49	+3.5
3,489,638	+		Sama_2936	0.49	+2.1
3,489,638	+		Sama_2936	0.49	+0.7
3,489,638	+		Sama_2936	0.49	+0.6
3,489,638	+		Sama_2936	0.49	+2.0
3,489,638	+		Sama_2936	0.49	+1.3
3,489,638	+		Sama_2936	0.49	+0.4
3,489,638	+		Sama_2936	0.49	+3.1
3,489,638	+		Sama_2936	0.49	+1.0
3,489,638	+		Sama_2936	0.49	+1.0
3,489,638	+		Sama_2936	0.49	+4.0
3,489,638	+		Sama_2936	0.49	+1.0
3,489,638	+		Sama_2936	0.49	-0.7
3,489,639	-		Sama_2936	0.49	+2.0
3,489,639	-		Sama_2936	0.49	+1.6
3,489,639	-		Sama_2936	0.49	+0.8
3,489,639	-		Sama_2936	0.49	+2.2
3,489,639	-		Sama_2936	0.49	+1.5
3,489,639	-		Sama_2936	0.49	+1.0
3,489,639	-		Sama_2936	0.49	+3.1
3,489,639	-		Sama_2936	0.49	+3.3
3,489,639	-		Sama_2936	0.49	-1.0
3,489,639	-		Sama_2936	0.49	+1.9
3,489,639	-		Sama_2936	0.49	+1.5
3,489,639	-		Sama_2936	0.49	+1.2
3,489,639	-		Sama_2936	0.49	+3.4
3,489,639	-		Sama_2936	0.49	+0.3
3,489,639	-		Sama_2936	0.49	-1.4
3,489,639	-		Sama_2936	0.49	+3.7
3,489,639	-		Sama_2936	0.49	+1.5
3,489,639	-		Sama_2936	0.49	+1.8
3,489,639	-		Sama_2936	0.49	+1.6
3,489,639	-		Sama_2936	0.49	+2.9
3,489,639	-		Sama_2936	0.49	-1.6
3,489,644	+		Sama_2936	0.50	+2.1
3,489,644	+		Sama_2936	0.50	+1.1
3,489,644	+		Sama_2936	0.50	+1.7
3,489,645	-		Sama_2936	0.50	-0.1
3,489,645	-		Sama_2936	0.50	+2.4
3,489,645	-		Sama_2936	0.50	+0.3
3,489,645	-		Sama_2936	0.50	+2.7
3,489,645	-		Sama_2936	0.50	+1.7
3,489,647	-		Sama_2936	0.51	+3.3
3,489,647	-		Sama_2936	0.51	+1.3
3,489,711	+		Sama_2936	0.60	+1.6
3,489,711	+		Sama_2936	0.60	-1.2
3,489,711	+		Sama_2936	0.60	+1.7
3,489,711	+		Sama_2936	0.60	+2.9
3,489,712	-		Sama_2936	0.60	+1.2
3,489,712	-		Sama_2936	0.60	-0.8
3,489,712	-		Sama_2936	0.60	+4.4
3,489,720	+		Sama_2936	0.61	+1.4
3,489,720	+		Sama_2936	0.61	+1.7
3,489,721	-		Sama_2936	0.61	+1.6
3,489,798	+		Sama_2936	0.72	+1.5
3,489,798	+		Sama_2936	0.72	+1.6
3,489,798	+		Sama_2936	0.72	+2.0
3,489,798	+		Sama_2936	0.72	+0.2
3,489,798	+		Sama_2936	0.72	+1.5
3,489,798	+		Sama_2936	0.72	+0.8
3,489,798	+		Sama_2936	0.72	+1.3
3,489,799	-		Sama_2936	0.73	+3.1
3,489,799	-		Sama_2936	0.73	-0.4
3,489,799	-		Sama_2936	0.73	+2.6
3,489,836	+		Sama_2936	0.78	+1.9
3,489,836	+		Sama_2936	0.78	-2.4
3,489,836	+		Sama_2936	0.78	+1.3
3,489,836	+		Sama_2936	0.78	+2.9
3,489,836	+		Sama_2936	0.78	+1.8
3,489,837	-		Sama_2936	0.78	+1.4
3,489,837	-		Sama_2936	0.78	+2.3
3,489,837	-		Sama_2936	0.78	+2.4
3,489,891	+		Sama_2936	0.86	+0.9
3,489,891	+		Sama_2936	0.86	+3.4
3,489,892	-		Sama_2936	0.86	+2.6
3,489,892	-		Sama_2936	0.86	+2.5
3,489,892	-		Sama_2936	0.86	+1.7
3,489,892	-		Sama_2936	0.86	-0.9
3,489,892	-		Sama_2936	0.86	-2.4
3,489,892	-		Sama_2936	0.86	-0.6
3,490,001	+				-1.8
3,490,023	+				+2.4
3,490,023	+				+0.7
3,490,024	-				+0.4
3,490,024	-				+0.8
3,490,024	-				+2.8
3,490,024	-				+1.4
3,490,028	-				-1.7
3,490,028	-				-1.4
3,490,130	+		Sama_2937	0.19	-1.8
3,490,130	+		Sama_2937	0.19	+1.0
3,490,130	+		Sama_2937	0.19	-2.0
3,490,130	+		Sama_2937	0.19	+2.2
3,490,130	+		Sama_2937	0.19	+0.5
3,490,130	+		Sama_2937	0.19	-1.9
3,490,131	-		Sama_2937	0.19	+0.6
3,490,131	-		Sama_2937	0.19	-0.9
3,490,131	-		Sama_2937	0.19	+2.3
3,490,131	-		Sama_2937	0.19	-0.7
3,490,193	-		Sama_2937	0.27	+1.3
3,490,256	+		Sama_2937	0.35	+1.2
3,490,257	-		Sama_2937	0.36	+1.0
3,490,286	+		Sama_2937	0.39	+0.9
3,490,396	+		Sama_2937	0.54	-1.2
3,490,397	-		Sama_2937	0.54	-0.2
3,490,413	+		Sama_2937	0.56	-1.6
3,490,414	-		Sama_2937	0.56	-1.0
3,490,414	-		Sama_2937	0.56	-1.2
3,490,490	+		Sama_2937	0.66	-2.8
3,490,547	+		Sama_2937	0.73	+2.2
3,490,548	-		Sama_2937	0.74	+0.3
3,490,548	-		Sama_2937	0.74	+1.8
3,490,548	-		Sama_2937	0.74	+1.4
3,490,548	-		Sama_2937	0.74	-0.5
3,490,625	+		Sama_2937	0.84	-0.5
3,490,625	+		Sama_2937	0.84	-0.6
3,490,626	-		Sama_2937	0.84	+1.9
3,490,651	-		Sama_2937	0.87	+1.3
3,490,651	-		Sama_2937	0.87	+1.5
3,490,651	-		Sama_2937	0.87	-1.9
3,490,713	+				-0.7
3,490,714	-				+0.1
3,490,720	-				-3.2
3,490,720	-				+0.4
3,490,720	-				-0.2
3,490,748	-				-0.9
3,490,788	+				-2.5
3,490,788	+				-1.4
3,490,789	-				+0.4
3,490,789	-				-1.4
3,490,789	-				-0.6
3,490,798	+				+1.2
3,490,799	-				+0.2
3,490,799	-				-1.3
3,490,810	+				+1.7
3,490,810	+				-0.0
3,490,844	+				-0.6
3,490,844	+				-0.9
3,490,845	-				-0.2
3,490,845	-				-2.3
3,490,852	-				-0.9
3,490,852	-				+2.3
3,490,890	+				-0.4
3,490,890	+				-1.0
3,490,890	+				+1.9
3,490,891	-				-0.2
3,490,891	-				-1.9
3,490,891	-				-2.4
3,490,893	+				-0.6
3,490,894	-				-0.7
3,490,894	-				-1.4
3,490,911	+				-2.2
3,490,911	+				+3.1
3,490,911	+				-0.5
3,490,911	+				+1.0
3,490,911	+				-1.1
3,490,911	+				+0.8
3,490,911	+				+1.6
3,490,911	+				+0.1
3,490,911	+				+0.7
3,490,911	+				+0.3
3,490,911	+				+2.4
3,490,911	+				+2.3
3,490,912	-				-2.0
3,490,912	-				-1.5
3,490,912	-				+0.3
3,490,912	-				-1.8
3,490,912	-				+0.6
3,490,912	-				-0.6
3,490,912	-				+0.0
3,490,912	-				+0.2
3,490,912	-				-0.2
3,490,912	-				+1.4
3,490,915	+				-0.4
3,490,915	+				+0.0
3,490,916	-				+1.0
3,490,916	-				+1.4
3,490,916	-				+1.5
3,490,926	-				-0.2
3,490,935	+				-0.9
3,490,936	-				-1.4
3,490,997	+				-1.6
3,490,998	-				+3.2
3,491,006	+				-0.6
3,491,006	+				-0.9
3,491,006	+				-0.6
3,491,007	-				+0.1
3,491,007	-				-0.2
3,491,008	+				-1.2
3,491,009	-				+3.9
3,491,015	-				+1.2
3,491,024	+				+1.3
3,491,024	+				+2.2
3,491,030	+				+0.3
3,491,030	+				+0.3
3,491,030	+				+3.4
3,491,030	+				+0.4
3,491,031	-				+1.3
3,491,031	-				+0.1
3,491,031	-				+2.4
3,491,049	+				-1.2
3,491,049	+				+0.6
3,491,056	+				+1.1
3,491,056	+				-0.8
3,491,056	+				-1.6
3,491,057	-				+1.1
3,491,057	-				+0.4
3,491,111	+				-0.6
3,491,114	+				-0.6
3,491,114	+				-0.2
3,491,115	-				-0.4
3,491,115	-				-0.2
3,491,172	+				+0.5
3,491,172	+				-0.8
3,491,173	-				-0.4
3,491,173	-				-0.5
3,491,173	-				-0.9
3,491,220	+				+0.8
3,491,221	-				-2.2
3,491,239	+				+1.4
3,491,239	+				-0.9
3,491,239	+				-0.6
3,491,239	+				-1.2
3,491,239	+				-0.8
3,491,239	+				-1.6
3,491,239	+				-0.7
3,491,239	+				+1.6
3,491,239	+				+4.2
3,491,239	+				-0.9
3,491,239	+				+2.2
3,491,239	+				-0.2
3,491,240	-				-1.7
3,491,240	-				+0.8
3,491,240	-				-0.2
3,491,240	-				+0.6
3,491,240	-				+1.5
3,491,240	-				+1.4
3,491,240	-				+1.4
3,491,240	-				-1.9
3,491,240	-				-1.3
3,491,240	-				+1.2
3,491,240	-				-1.7
3,491,240	-				-3.0
3,491,240	-				-0.3
3,491,241	+				+1.9
3,491,242	-				-1.1
3,491,242	-				-1.9
3,491,242	-				+0.7
3,491,242	-				+1.8
3,491,283	+				+0.8
3,491,310	+				+1.9
3,491,311	-				+1.4
3,491,311	-				-0.9
3,491,312	+				-3.2
3,491,312	+				-0.2
3,491,313	-				+0.6
3,491,313	-				+0.2
3,491,313	-				-1.0
3,491,391	-				-1.4
3,491,391	-				-2.5
3,491,395	+		Sama_2938	0.10	-0.2
3,491,436	+		Sama_2938	0.12	+0.0
3,491,437	-		Sama_2938	0.12	-1.2
3,491,437	-		Sama_2938	0.12	-0.4
3,491,524	+		Sama_2938	0.16	+0.2
3,491,524	+		Sama_2938	0.16	-1.2
3,491,525	-		Sama_2938	0.16	-3.2
3,491,525	-		Sama_2938	0.16	+0.1
3,491,525	-		Sama_2938	0.16	-0.2
3,491,525	-		Sama_2938	0.16	-0.9
3,491,553	+		Sama_2938	0.17	-3.1
3,491,554	-		Sama_2938	0.17	+1.4
3,491,554	-		Sama_2938	0.17	-0.8
3,491,554	-		Sama_2938	0.17	+0.2
3,491,575	-		Sama_2938	0.18	-0.2
3,491,592	+		Sama_2938	0.19	+1.7
3,491,593	-		Sama_2938	0.19	+0.8
3,491,653	-		Sama_2938	0.22	+0.8
3,491,653	-		Sama_2938	0.22	+0.2
3,491,670	-		Sama_2938	0.23	-2.8
3,491,673	+		Sama_2938	0.23	+4.3
3,491,673	+		Sama_2938	0.23	+0.4
3,491,673	+		Sama_2938	0.23	+0.7
3,491,673	+		Sama_2938	0.23	-0.9
3,491,673	+		Sama_2938	0.23	+0.2
3,491,673	+		Sama_2938	0.23	+0.6
3,491,674	-		Sama_2938	0.23	-1.7
3,491,745	+		Sama_2938	0.26	+2.6
3,491,745	+		Sama_2938	0.26	-0.2
3,491,745	+		Sama_2938	0.26	-1.6
3,491,745	+		Sama_2938	0.26	-1.2
3,491,745	+		Sama_2938	0.26	+0.4
3,491,745	+		Sama_2938	0.26	-0.9
3,491,745	+		Sama_2938	0.26	+0.9
3,491,745	+		Sama_2938	0.26	+0.7
3,491,745	+		Sama_2938	0.26	-1.9
3,491,745	+		Sama_2938	0.26	+1.8
3,491,746	-		Sama_2938	0.26	-0.6
3,491,746	-		Sama_2938	0.26	-0.8
3,491,746	-		Sama_2938	0.26	+0.8
3,491,746	-		Sama_2938	0.26	+1.0
3,491,746	-		Sama_2938	0.26	+0.2
3,491,746	-		Sama_2938	0.26	+0.4
3,491,746	-		Sama_2938	0.26	+0.8
3,491,746	-		Sama_2938	0.26	+0.3
3,491,746	-		Sama_2938	0.26	-1.2
3,491,746	-		Sama_2938	0.26	-0.8
3,491,746	-		Sama_2938	0.26	+2.6
3,491,746	-		Sama_2938	0.26	+2.7