Strain Fitness in Shewanella amazonensis SB2B around Sama_2712

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,242,367	+		Sama_2710	0.41	-0.9
3,242,367	+		Sama_2710	0.41	-2.4
3,242,367	+		Sama_2710	0.41	+0.3
3,242,370	+		Sama_2710	0.42	+2.4
3,242,370	+		Sama_2710	0.42	+0.7
3,242,370	+		Sama_2710	0.42	-0.3
3,242,370	+		Sama_2710	0.42	-2.7
3,242,371	-		Sama_2710	0.43	+0.8
3,242,371	-		Sama_2710	0.43	-0.7
3,242,371	-		Sama_2710	0.43	-0.6
3,242,377	+		Sama_2710	0.44	+2.6
3,242,377	+		Sama_2710	0.44	+1.3
3,242,378	-		Sama_2710	0.45	+0.3
3,242,378	-		Sama_2710	0.45	-1.7
3,242,386	+		Sama_2710	0.47	-0.7
3,242,387	-		Sama_2710	0.47	-3.2
3,242,387	-		Sama_2710	0.47	-0.1
3,242,439	+		Sama_2710	0.62	+0.3
3,242,440	-		Sama_2710	0.62	+0.9
3,242,463	+		Sama_2710	0.68	+0.1
3,242,463	+		Sama_2710	0.68	+2.1
3,242,463	+		Sama_2710	0.68	-0.3
3,242,463	+		Sama_2710	0.68	-2.0
3,242,464	-		Sama_2710	0.69	+0.7
3,242,464	-		Sama_2710	0.69	-0.0
3,242,542	+				+0.3
3,242,542	+				-1.9
3,242,542	+				-1.3
3,242,542	+				-0.3
3,242,543	-				-1.3
3,242,569	+				-2.2
3,242,644	-				-3.0
3,242,644	-				-0.9
3,242,727	+		Sama_2711	0.22	+0.2
3,242,728	-		Sama_2711	0.23	-0.1
3,242,728	-		Sama_2711	0.23	+4.0
3,242,728	-		Sama_2711	0.23	-0.7
3,242,796	-		Sama_2711	0.36	-0.3
3,242,796	-		Sama_2711	0.36	+1.0
3,242,796	-		Sama_2711	0.36	+0.1
3,242,798	-		Sama_2711	0.36	+0.4
3,242,843	+		Sama_2711	0.45	-1.0
3,242,843	+		Sama_2711	0.45	-0.7
3,242,844	-		Sama_2711	0.45	+2.5
3,242,869	+		Sama_2711	0.50	-1.0
3,242,870	-		Sama_2711	0.50	-0.3
3,242,870	-		Sama_2711	0.50	+0.4
3,242,954	+		Sama_2711	0.67	-0.3
3,242,954	+		Sama_2711	0.67	+1.0
3,242,954	+		Sama_2711	0.67	+3.1
3,242,955	-		Sama_2711	0.67	-0.9
3,242,955	-		Sama_2711	0.67	-0.7
3,242,960	+		Sama_2711	0.68	-0.6
3,242,960	+		Sama_2711	0.68	+1.3
3,242,961	-		Sama_2711	0.68	-0.3
3,242,961	-		Sama_2711	0.68	+0.6
3,242,961	-		Sama_2711	0.68	-0.3
3,243,068	-		Sama_2711	0.89	+1.2
3,243,081	-				-1.0
3,243,081	-				-2.0
3,243,122	+				-0.3
3,243,124	+				-0.8
3,243,124	+				+2.4
3,243,124	+				+1.3
3,243,124	+				-0.5
3,243,124	+				+1.7
3,243,124	+				-0.8
3,243,125	-				+0.2
3,243,125	-				-2.6
3,243,125	-				+1.3
3,243,131	+				+1.0
3,243,131	+				+0.2
3,243,132	-				+0.6
3,243,132	-				+0.0
3,243,132	-				+0.3
3,243,132	-				+2.9
3,243,139	+				-2.7
3,243,139	+				-0.5
3,243,140	-				+4.5
3,243,140	-				+2.1
3,243,140	-				+0.7
3,243,140	-				+1.3
3,243,182	+				-0.7
3,243,183	-				+0.3
3,243,216	-				-0.7
3,243,217	-				+1.0
3,243,223	+				-0.3
3,243,224	-				+1.3
3,243,291	+				+2.3
3,243,292	-				-1.7
3,243,456	+		Sama_2712	0.12	-2.7
3,243,456	+		Sama_2712	0.12	-1.5
3,243,456	+		Sama_2712	0.12	-0.7
3,243,457	-		Sama_2712	0.12	+0.0
3,243,485	+		Sama_2712	0.16	-2.0
3,243,486	-		Sama_2712	0.16	-0.7
3,243,486	-		Sama_2712	0.16	-0.2
3,243,486	-		Sama_2712	0.16	+1.6
3,243,486	-		Sama_2712	0.16	+2.2
3,243,486	-		Sama_2712	0.16	+1.6
3,243,487	+		Sama_2712	0.16	-1.3
3,243,487	+		Sama_2712	0.16	-2.0
3,243,487	+		Sama_2712	0.16	+0.3
3,243,487	+		Sama_2712	0.16	+1.1
3,243,488	-		Sama_2712	0.16	-0.3
3,243,488	-		Sama_2712	0.16	+0.3
3,243,488	-		Sama_2712	0.16	-2.0
3,243,488	-		Sama_2712	0.16	-0.3
3,243,488	-		Sama_2712	0.16	+1.5
3,243,488	-		Sama_2712	0.16	-0.6
3,243,488	-		Sama_2712	0.16	-0.8
3,243,488	-		Sama_2712	0.16	-2.4
3,243,488	-		Sama_2712	0.16	+1.3
3,243,488	-		Sama_2712	0.16	-0.1
3,243,488	-		Sama_2712	0.16	-2.2
3,243,521	-		Sama_2712	0.20	-0.9
3,243,544	+		Sama_2712	0.22	+3.5
3,243,544	+		Sama_2712	0.22	-0.4
3,243,544	+		Sama_2712	0.22	+1.3
3,243,545	-		Sama_2712	0.22	+2.3
3,243,558	+		Sama_2712	0.24	-1.0
3,243,559	-		Sama_2712	0.24	-0.6
3,243,559	-		Sama_2712	0.24	+2.1
3,243,559	-		Sama_2712	0.24	+1.0
3,243,559	-		Sama_2712	0.24	-1.5
3,243,565	-		Sama_2712	0.24	-1.3
3,243,645	+		Sama_2712	0.33	-0.3
3,243,645	+		Sama_2712	0.33	+3.1
3,243,646	-		Sama_2712	0.33	+1.8
3,243,646	-		Sama_2712	0.33	-2.5
3,243,646	-		Sama_2712	0.33	-0.7
3,243,646	-		Sama_2712	0.33	-0.2
3,243,719	+		Sama_2712	0.42	-1.5
3,243,720	-		Sama_2712	0.42	+0.8
3,243,720	-		Sama_2712	0.42	-2.4
3,243,720	-		Sama_2712	0.42	-1.0
3,243,720	-		Sama_2712	0.42	+0.4
3,243,739	-		Sama_2712	0.44	+1.9
3,243,758	+		Sama_2712	0.46	-0.1
3,243,758	+		Sama_2712	0.46	+0.3
3,243,759	-		Sama_2712	0.46	+1.0
3,243,803	-		Sama_2712	0.51	+2.0
3,243,803	-		Sama_2712	0.51	-0.7
3,243,803	-		Sama_2712	0.51	-2.7
3,243,803	-		Sama_2712	0.51	+1.6
3,243,842	+		Sama_2712	0.55	+0.7
3,243,842	+		Sama_2712	0.55	-1.3
3,243,872	+		Sama_2712	0.59	+2.0
3,243,872	+		Sama_2712	0.59	-1.5
3,243,873	-		Sama_2712	0.59	+0.6
3,243,873	-		Sama_2712	0.59	+0.7
3,243,904	+		Sama_2712	0.62	-0.0
3,243,904	+		Sama_2712	0.62	-1.5
3,243,904	+		Sama_2712	0.62	-1.6
3,243,904	+		Sama_2712	0.62	-1.0
3,243,905	-		Sama_2712	0.62	-1.2
3,243,905	-		Sama_2712	0.62	+0.6
3,243,905	-		Sama_2712	0.62	-1.7
3,243,905	-		Sama_2712	0.62	+1.0
3,243,905	-		Sama_2712	0.62	-0.0
3,243,966	+		Sama_2712	0.69	+2.3
3,243,966	+		Sama_2712	0.69	+1.6
3,243,967	-		Sama_2712	0.69	-1.9
3,243,967	-		Sama_2712	0.69	-1.7
3,244,109	-		Sama_2712	0.85	+3.4
3,244,109	-		Sama_2712	0.85	-0.9
3,244,188	+				+0.0
3,244,255	+				+0.1
3,244,255	+				-1.1
3,244,255	+				-2.9
3,244,255	+				+0.9
3,244,255	+				-1.7
3,244,256	-				+1.6
3,244,256	-				-2.3
3,244,256	-				-1.9
3,244,256	-				+1.6
3,244,256	-				+0.7
3,244,256	-				-2.0
3,244,256	-				-0.7
3,244,259	+				+1.3
3,244,259	+				+0.3
3,244,259	+				-1.2
3,244,259	+				+1.9
3,244,259	+				+0.6
3,244,259	+				-0.2
3,244,259	+				+0.1
3,244,260	-				-0.0
3,244,260	-				+1.5
3,244,260	-				-1.8
3,244,260	-				-0.4
3,244,260	-				+1.4
3,244,260	-				+0.5
3,244,260	-				+0.0
3,244,260	-				+0.3
3,244,260	-				-0.7
3,244,260	-				+1.8
3,244,301	+				-0.1
3,244,421	+				+1.6
3,244,421	+				-2.3
3,244,422	-				-0.4
3,244,445	+				+1.5
3,244,459	+				+0.8
3,244,470	+				+1.1
3,244,470	+				+0.8
3,244,470	+				+1.4
3,244,471	-				+4.5
3,244,471	-				-0.1
3,244,471	-				-0.3
3,244,472	+				-0.4
3,244,472	+				-1.9
3,244,472	+				-2.0
3,244,472	+				-1.2
3,244,473	-				+0.3
3,244,473	-				-2.3
3,244,473	-				+2.1
3,244,621	+		Sama_2713	0.12	+4.1
3,244,699	+		Sama_2713	0.15	+1.6
3,244,700	-		Sama_2713	0.15	+0.6
3,244,764	-		Sama_2713	0.18	-1.7
3,244,790	-		Sama_2713	0.20	-1.0
3,244,790	-		Sama_2713	0.20	+0.8
3,244,790	-		Sama_2713	0.20	+0.1
3,244,790	-		Sama_2713	0.20	-1.3
3,244,790	-		Sama_2713	0.20	+2.2
3,244,905	+		Sama_2713	0.25	-2.0
3,244,905	+		Sama_2713	0.25	-1.9
3,244,905	+		Sama_2713	0.25	+0.3
3,244,905	+		Sama_2713	0.25	+4.4
3,244,906	-		Sama_2713	0.25	-1.9
3,244,906	-		Sama_2713	0.25	-2.5
3,244,906	-		Sama_2713	0.25	+0.5
3,244,906	-		Sama_2713	0.25	-1.0
3,244,906	-		Sama_2713	0.25	-0.7
3,244,954	+		Sama_2713	0.28	+0.5
3,244,954	+		Sama_2713	0.28	+1.4
3,244,955	-		Sama_2713	0.28	+1.1
3,244,955	-		Sama_2713	0.28	-2.0
3,245,011	+		Sama_2713	0.30	-0.3
3,245,106	+		Sama_2713	0.35	+0.1
3,245,106	+		Sama_2713	0.35	-1.5
3,245,106	+		Sama_2713	0.35	+2.7
3,245,106	+		Sama_2713	0.35	+1.1
3,245,106	+		Sama_2713	0.35	+0.6
3,245,107	-		Sama_2713	0.35	+0.5
3,245,147	-		Sama_2713	0.37	-1.5
3,245,159	-		Sama_2713	0.38	+1.5