Strain Fitness in Shewanella amazonensis SB2B around Sama_2527

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,035,239	+		Sama_2526	0.24	-1.3
3,035,239	+		Sama_2526	0.24	-1.8
3,035,353	+		Sama_2526	0.36	+0.7
3,035,353	+		Sama_2526	0.36	-1.3
3,035,434	+		Sama_2526	0.44	-0.3
3,035,435	-		Sama_2526	0.44	-2.4
3,035,435	-		Sama_2526	0.44	-1.1
3,035,452	-		Sama_2526	0.46	-2.6
3,035,471	+		Sama_2526	0.47	-0.3
3,035,472	-		Sama_2526	0.48	-0.7
3,035,479	+		Sama_2526	0.48	-2.6
3,035,479	+		Sama_2526	0.48	+0.3
3,035,479	+		Sama_2526	0.48	-2.3
3,035,479	+		Sama_2526	0.48	-1.7
3,035,479	+		Sama_2526	0.48	-2.3
3,035,479	+		Sama_2526	0.48	+0.4
3,035,480	-		Sama_2526	0.48	-0.7
3,035,480	-		Sama_2526	0.48	-0.8
3,035,480	-		Sama_2526	0.48	-1.2
3,035,480	-		Sama_2526	0.48	-2.0
3,035,480	-		Sama_2526	0.48	-2.4
3,035,480	-		Sama_2526	0.48	+1.0
3,035,480	-		Sama_2526	0.48	-1.1
3,035,496	+		Sama_2526	0.50	+1.5
3,035,506	+		Sama_2526	0.51	-1.3
3,035,506	+		Sama_2526	0.51	-1.3
3,035,507	-		Sama_2526	0.51	+1.2
3,035,507	-		Sama_2526	0.51	+0.8
3,035,507	-		Sama_2526	0.51	-1.3
3,035,576	+		Sama_2526	0.58	-1.1
3,035,576	+		Sama_2526	0.58	+1.0
3,035,576	+		Sama_2526	0.58	+0.3
3,035,576	+		Sama_2526	0.58	+1.3
3,035,577	-		Sama_2526	0.58	+0.3
3,035,577	-		Sama_2526	0.58	-1.9
3,035,577	-		Sama_2526	0.58	-0.1
3,035,577	-		Sama_2526	0.58	+2.3
3,035,577	-		Sama_2526	0.58	+3.6
3,035,577	-		Sama_2526	0.58	+2.3
3,035,601	-		Sama_2526	0.60	-2.4
3,035,601	-		Sama_2526	0.60	-1.6
3,035,601	-		Sama_2526	0.60	+0.6
3,035,645	+		Sama_2526	0.65	-1.1
3,035,645	+		Sama_2526	0.65	-1.1
3,035,646	-		Sama_2526	0.65	-0.6
3,035,646	-		Sama_2526	0.65	-1.6
3,035,652	+		Sama_2526	0.65	+0.3
3,035,653	-		Sama_2526	0.66	-1.2
3,035,653	-		Sama_2526	0.66	+3.1
3,035,653	-		Sama_2526	0.66	-0.2
3,035,653	-		Sama_2526	0.66	+1.9
3,035,697	+		Sama_2526	0.70	-0.9
3,035,697	+		Sama_2526	0.70	+2.8
3,035,697	+		Sama_2526	0.70	+2.7
3,035,698	-		Sama_2526	0.70	-1.1
3,035,698	-		Sama_2526	0.70	-1.0
3,035,698	-		Sama_2526	0.70	-1.6
3,035,705	+		Sama_2526	0.71	+1.9
3,035,706	-		Sama_2526	0.71	+1.3
3,035,807	+		Sama_2526	0.81	+1.0
3,035,807	+		Sama_2526	0.81	+0.1
3,035,807	+		Sama_2526	0.81	+0.9
3,035,808	-		Sama_2526	0.81	+0.7
3,035,998	-				-1.6
3,035,998	-				+2.0
3,036,010	-				+0.1
3,036,145	-				+0.3
3,036,177	+				-1.1
3,036,178	-				-2.4
3,036,182	+				+0.6
3,036,182	+				-0.7
3,036,182	+				-0.7
3,036,182	+				-1.1
3,036,183	-				+1.3
3,036,230	+				-1.2
3,036,375	-		Sama_2527	0.13	+2.0
3,036,407	+		Sama_2527	0.16	+1.0
3,036,407	+		Sama_2527	0.16	-0.1
3,036,408	-		Sama_2527	0.16	-0.2
3,036,408	-		Sama_2527	0.16	+3.4
3,036,408	-		Sama_2527	0.16	-0.6
3,036,408	-		Sama_2527	0.16	-0.5
3,036,443	+		Sama_2527	0.19	-0.7
3,036,444	-		Sama_2527	0.19	-0.3
3,036,454	+		Sama_2527	0.20	-2.3
3,036,454	+		Sama_2527	0.20	-0.0
3,036,455	-		Sama_2527	0.20	+2.1
3,036,455	-		Sama_2527	0.20	+1.3
3,036,522	-		Sama_2527	0.26	-3.7
3,036,522	-		Sama_2527	0.26	-1.9
3,036,522	-		Sama_2527	0.26	+2.1
3,036,544	+		Sama_2527	0.29	+1.3
3,036,544	+		Sama_2527	0.29	+2.3
3,036,639	+		Sama_2527	0.37	+0.3
3,036,639	+		Sama_2527	0.37	+0.8
3,036,640	-		Sama_2527	0.38	+0.1
3,036,640	-		Sama_2527	0.38	-1.1
3,036,658	+		Sama_2527	0.39	-0.5
3,036,698	+		Sama_2527	0.43	-2.6
3,036,698	+		Sama_2527	0.43	-0.4
3,036,698	+		Sama_2527	0.43	-2.7
3,036,698	+		Sama_2527	0.43	+0.6
3,036,822	+		Sama_2527	0.55	+0.1
3,036,822	+		Sama_2527	0.55	-0.3
3,036,822	+		Sama_2527	0.55	+0.1
3,036,822	+		Sama_2527	0.55	-0.6
3,036,822	+		Sama_2527	0.55	-1.7
3,036,823	-		Sama_2527	0.55	-1.9
3,036,823	-		Sama_2527	0.55	-1.6
3,036,823	-		Sama_2527	0.55	-0.6
3,036,823	-		Sama_2527	0.55	+1.0
3,036,823	-		Sama_2527	0.55	-2.4
3,036,838	+		Sama_2527	0.56	-1.0
3,036,839	-		Sama_2527	0.56	-1.2
3,036,839	-		Sama_2527	0.56	-0.3
3,036,841	+		Sama_2527	0.56	+2.6
3,036,841	+		Sama_2527	0.56	+1.0
3,036,841	+		Sama_2527	0.56	+1.3
3,036,841	+		Sama_2527	0.56	-1.2
3,036,841	+		Sama_2527	0.56	-0.1
3,036,841	+		Sama_2527	0.56	-0.2
3,036,842	-		Sama_2527	0.56	+0.4
3,036,842	-		Sama_2527	0.56	-0.6
3,036,842	-		Sama_2527	0.56	+1.3
3,036,875	-		Sama_2527	0.60	+1.8
3,036,875	-		Sama_2527	0.60	+1.3
3,036,917	+		Sama_2527	0.63	+0.2
3,036,917	+		Sama_2527	0.63	-0.0
3,036,917	+		Sama_2527	0.63	-1.3
3,036,917	+		Sama_2527	0.63	-0.7
3,036,918	-		Sama_2527	0.64	+0.3
3,036,918	-		Sama_2527	0.64	-0.1
3,036,943	+		Sama_2527	0.66	-1.5
3,036,963	+		Sama_2527	0.68	-2.1
3,036,964	-		Sama_2527	0.68	-2.2
3,036,964	-		Sama_2527	0.68	+0.7
3,036,964	-		Sama_2527	0.68	-1.6
3,036,990	+		Sama_2527	0.70	-0.3
3,036,991	-		Sama_2527	0.70	+1.4
3,037,018	+		Sama_2527	0.73	-0.9
3,037,027	+		Sama_2527	0.74	+1.6
3,037,027	+		Sama_2527	0.74	-0.9
3,037,027	+		Sama_2527	0.74	-2.7
3,037,027	+		Sama_2527	0.74	-2.3
3,037,027	+		Sama_2527	0.74	-1.7
3,037,028	-		Sama_2527	0.74	-1.2
3,037,028	-		Sama_2527	0.74	-0.2
3,037,028	-		Sama_2527	0.74	+0.3
3,037,029	+		Sama_2527	0.74	+0.4
3,037,049	+		Sama_2527	0.76	-1.1
3,037,050	-		Sama_2527	0.76	-1.3
3,037,050	-		Sama_2527	0.76	+1.3
3,037,071	+		Sama_2527	0.78	-1.6
3,037,071	+		Sama_2527	0.78	-0.1
3,037,072	-		Sama_2527	0.78	+0.5
3,037,072	-		Sama_2527	0.78	+0.0
3,037,072	-		Sama_2527	0.78	-0.2
3,037,125	+		Sama_2527	0.83	-2.2
3,037,125	+		Sama_2527	0.83	-1.1
3,037,126	-		Sama_2527	0.83	+1.3
3,037,126	-		Sama_2527	0.83	-0.4
3,037,126	-		Sama_2527	0.83	-1.2
3,037,148	+		Sama_2527	0.85	-0.7
3,037,148	+		Sama_2527	0.85	-2.2
3,037,149	-		Sama_2527	0.85	+2.8
3,037,149	-		Sama_2527	0.85	-1.2
3,037,149	-		Sama_2527	0.85	-1.6
3,037,149	-		Sama_2527	0.85	+1.4
3,037,170	+		Sama_2527	0.87	+2.3
3,037,170	+		Sama_2527	0.87	-1.6
3,037,170	+		Sama_2527	0.87	+1.7
3,037,170	+		Sama_2527	0.87	-1.8
3,037,171	-		Sama_2527	0.87	-1.3
3,037,171	-		Sama_2527	0.87	-0.4
3,037,171	-		Sama_2527	0.87	-1.6
3,037,171	-		Sama_2527	0.87	-0.3
3,037,236	+				+0.9
3,037,236	+				-0.6
3,037,237	-				+0.1
3,037,289	-				-0.6
3,037,289	-				-2.3
3,037,310	+				-2.3
3,037,310	+				-0.3
3,037,311	-				+0.7
3,037,311	-				-1.6
3,037,328	+				-1.1
3,037,329	-				+0.8
3,037,329	-				+1.4
3,037,393	+				-0.9
3,037,393	+				-0.1
3,037,412	+				+1.2
3,037,412	+				+0.7
3,037,412	+				-1.3
3,037,412	+				-0.7
3,037,413	-				-2.1
3,037,416	-				-0.6
3,037,416	-				-3.3
3,037,568	+				-3.0
3,037,590	+				-1.3
3,037,590	+				-0.0
3,037,590	+				-1.2
3,037,590	+				-0.2
3,037,591	-				-2.2
3,037,591	-				-0.3
3,037,591	-				-1.8
3,037,685	+		Sama_2528	0.15	+0.1
3,037,685	+		Sama_2528	0.15	+0.6
3,037,685	+		Sama_2528	0.15	+1.7
3,037,731	-		Sama_2528	0.17	+0.8
3,037,761	-		Sama_2528	0.18	+0.2
3,037,897	-		Sama_2528	0.25	+0.2
3,037,897	-		Sama_2528	0.25	+1.6
3,037,897	-		Sama_2528	0.25	+0.7
3,037,935	+		Sama_2528	0.27	-0.1
3,037,935	+		Sama_2528	0.27	+0.6
3,037,935	+		Sama_2528	0.27	+1.6
3,037,936	-		Sama_2528	0.27	+1.6
3,037,953	+		Sama_2528	0.28	-2.0
3,037,953	+		Sama_2528	0.28	-1.3
3,037,953	+		Sama_2528	0.28	-0.2
3,037,954	-		Sama_2528	0.28	+1.5
3,037,954	-		Sama_2528	0.28	+2.2
3,037,954	-		Sama_2528	0.28	+0.7
3,037,954	-		Sama_2528	0.28	-0.4
3,037,954	-		Sama_2528	0.28	-1.3
3,037,977	+		Sama_2528	0.29	+2.6
3,037,977	+		Sama_2528	0.29	-1.2
3,038,002	-		Sama_2528	0.31	+2.7
3,038,102	+		Sama_2528	0.36	-1.3
3,038,241	+		Sama_2528	0.42	+1.0
3,038,241	+		Sama_2528	0.42	+1.2
3,038,241	+		Sama_2528	0.42	+1.2