Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2278 and Sama_2279 are separated by 13 nucleotides Sama_2279 and fliA are separated by 44 nucleotides fliA and Sama_2281 overlap by 8 nucleotides Sama_2281 and flhF are separated by 4 nucleotides
Sama_2278: Sama_2278 - putative chemotaxis phosphatase, CheZ (RefSeq), at 2,744,647 to 2,745,384
_2278
Sama_2279: Sama_2279 - response regulator receiver protein (RefSeq), at 2,745,398 to 2,745,781
_2279
Sama_2280: fliA - flagellar biosynthesis sigma factor (RefSeq), at 2,745,826 to 2,746,545
fliA
Sama_2281: Sama_2281 - cobyrinic acid a,c-diamide synthase (RefSeq), at 2,746,538 to 2,747,419
_2281
Sama_2282: flhF - flagellar biosynthesis regulator FlhF (RefSeq), at 2,747,424 to 2,748,815
flhF
Position (kb)
2745
2746
2747 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2744.960 kb on - strand, within Sama_2278 at 2744.960 kb on - strand, within Sama_2278 at 2744.960 kb on - strand, within Sama_2278 at 2744.989 kb on - strand, within Sama_2278 at 2745.043 kb on - strand, within Sama_2278 at 2745.052 kb on - strand, within Sama_2278 at 2745.121 kb on - strand, within Sama_2278 at 2745.121 kb on - strand, within Sama_2278 at 2745.121 kb on - strand, within Sama_2278 at 2745.121 kb on - strand, within Sama_2278 at 2745.124 kb on + strand, within Sama_2278 at 2745.124 kb on + strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.125 kb on - strand, within Sama_2278 at 2745.132 kb on - strand, within Sama_2278 at 2745.160 kb on - strand, within Sama_2278 at 2745.221 kb on - strand, within Sama_2278 at 2745.221 kb on - strand, within Sama_2278 at 2745.293 kb on - strand, within Sama_2278 at 2745.293 kb on - strand, within Sama_2278 at 2745.358 kb on - strand at 2745.358 kb on - strand at 2745.385 kb on - strand at 2745.385 kb on - strand at 2745.461 kb on - strand, within Sama_2279 at 2745.469 kb on - strand, within Sama_2279 at 2745.469 kb on - strand, within Sama_2279 at 2745.469 kb on - strand, within Sama_2279 at 2745.545 kb on - strand, within Sama_2279 at 2745.692 kb on - strand, within Sama_2279 at 2745.692 kb on - strand, within Sama_2279 at 2745.695 kb on - strand, within Sama_2279 at 2745.728 kb on - strand, within Sama_2279 at 2745.728 kb on - strand, within Sama_2279 at 2745.770 kb on - strand at 2745.770 kb on - strand at 2745.770 kb on - strand at 2745.770 kb on - strand at 2745.770 kb on - strand at 2745.808 kb on - strand at 2745.828 kb on - strand at 2745.828 kb on - strand at 2745.828 kb on - strand at 2745.830 kb on - strand at 2745.830 kb on - strand at 2745.853 kb on - strand at 2745.853 kb on - strand at 2746.047 kb on - strand, within fliA at 2746.047 kb on - strand, within fliA at 2746.047 kb on - strand, within fliA at 2746.094 kb on - strand, within fliA at 2746.100 kb on - strand, within fliA at 2746.109 kb on - strand, within fliA at 2746.109 kb on - strand, within fliA at 2746.123 kb on - strand, within fliA at 2746.147 kb on - strand, within fliA at 2746.155 kb on - strand, within fliA at 2746.155 kb on - strand, within fliA at 2746.155 kb on - strand, within fliA at 2746.235 kb on - strand, within fliA at 2746.261 kb on - strand, within fliA at 2746.323 kb on + strand, within fliA at 2746.430 kb on - strand, within fliA at 2746.430 kb on - strand, within fliA at 2746.455 kb on + strand, within fliA at 2746.455 kb on + strand, within fliA at 2746.456 kb on - strand, within fliA at 2746.456 kb on - strand, within fliA at 2746.456 kb on - strand, within fliA at 2746.456 kb on - strand, within fliA at 2746.456 kb on - strand, within fliA at 2746.487 kb on + strand at 2746.509 kb on + strand at 2746.510 kb on - strand at 2746.525 kb on - strand at 2746.525 kb on - strand at 2746.526 kb on + strand at 2746.527 kb on - strand at 2746.527 kb on - strand at 2746.540 kb on - strand at 2746.540 kb on - strand at 2746.578 kb on - strand at 2746.578 kb on - strand at 2746.628 kb on - strand, within Sama_2281 at 2746.646 kb on - strand, within Sama_2281 at 2746.646 kb on - strand, within Sama_2281 at 2746.663 kb on - strand, within Sama_2281 at 2746.698 kb on - strand, within Sama_2281 at 2746.698 kb on - strand, within Sama_2281 at 2746.715 kb on - strand, within Sama_2281 at 2746.719 kb on - strand, within Sama_2281 at 2746.838 kb on - strand, within Sama_2281 at 2746.847 kb on - strand, within Sama_2281 at 2746.847 kb on - strand, within Sama_2281 at 2746.847 kb on - strand, within Sama_2281 at 2746.941 kb on - strand, within Sama_2281 at 2746.941 kb on - strand, within Sama_2281 at 2746.941 kb on - strand, within Sama_2281 at 2746.941 kb on - strand, within Sama_2281 at 2746.941 kb on - strand, within Sama_2281 at 2746.941 kb on - strand, within Sama_2281 at 2746.944 kb on - strand, within Sama_2281 at 2746.944 kb on - strand, within Sama_2281 at 2746.944 kb on - strand, within Sama_2281 at 2747.018 kb on - strand, within Sama_2281 at 2747.114 kb on - strand, within Sama_2281 at 2747.124 kb on - strand, within Sama_2281 at 2747.124 kb on - strand, within Sama_2281 at 2747.184 kb on - strand, within Sama_2281 at 2747.300 kb on - strand, within Sama_2281 at 2747.374 kb on - strand at 2747.390 kb on - strand at 2747.420 kb on - strand at 2747.426 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.460 kb on - strand at 2747.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 2,744,960 - Sama_2278 0.42 -0.9 2,744,960 - Sama_2278 0.42 -2.3 2,744,960 - Sama_2278 0.42 -2.0 2,744,989 - Sama_2278 0.46 -1.9 2,745,043 - Sama_2278 0.54 -2.8 2,745,052 - Sama_2278 0.55 -3.3 2,745,121 - Sama_2278 0.64 -1.7 2,745,121 - Sama_2278 0.64 -1.3 2,745,121 - Sama_2278 0.64 +0.5 2,745,121 - Sama_2278 0.64 -0.5 2,745,124 + Sama_2278 0.65 -1.3 2,745,124 + Sama_2278 0.65 +0.0 2,745,125 - Sama_2278 0.65 -1.3 2,745,125 - Sama_2278 0.65 -1.7 2,745,125 - Sama_2278 0.65 +0.4 2,745,125 - Sama_2278 0.65 -2.0 2,745,125 - Sama_2278 0.65 -0.2 2,745,125 - Sama_2278 0.65 -2.1 2,745,125 - Sama_2278 0.65 -2.9 2,745,125 - Sama_2278 0.65 -1.5 2,745,132 - Sama_2278 0.66 -1.3 2,745,160 - Sama_2278 0.70 -2.0 2,745,221 - Sama_2278 0.78 -0.9 2,745,221 - Sama_2278 0.78 +0.5 2,745,293 - Sama_2278 0.88 -3.5 2,745,293 - Sama_2278 0.88 -1.9 2,745,358 - -0.1 2,745,358 - -2.2 2,745,385 - -1.9 2,745,385 - -2.9 2,745,461 - Sama_2279 0.16 -1.9 2,745,469 - Sama_2279 0.18 +0.5 2,745,469 - Sama_2279 0.18 -3.7 2,745,469 - Sama_2279 0.18 -2.4 2,745,545 - Sama_2279 0.38 -2.0 2,745,692 - Sama_2279 0.77 -3.0 2,745,692 - Sama_2279 0.77 -0.5 2,745,695 - Sama_2279 0.77 -2.1 2,745,728 - Sama_2279 0.86 +0.2 2,745,728 - Sama_2279 0.86 -0.9 2,745,770 - -2.7 2,745,770 - -3.3 2,745,770 - -0.5 2,745,770 - -3.3 2,745,770 - -1.3 2,745,808 - -1.3 2,745,828 - -2.4 2,745,828 - -2.1 2,745,828 - -2.1 2,745,830 - -2.3 2,745,830 - -0.4 2,745,853 - -2.1 2,745,853 - -1.5 2,746,047 - fliA Sama_2280 0.31 -1.1 2,746,047 - fliA Sama_2280 0.31 -4.5 2,746,047 - fliA Sama_2280 0.31 -1.1 2,746,094 - fliA Sama_2280 0.37 -2.1 2,746,100 - fliA Sama_2280 0.38 -1.1 2,746,109 - fliA Sama_2280 0.39 -2.7 2,746,109 - fliA Sama_2280 0.39 -2.6 2,746,123 - fliA Sama_2280 0.41 +0.5 2,746,147 - fliA Sama_2280 0.45 -1.1 2,746,155 - fliA Sama_2280 0.46 -0.1 2,746,155 - fliA Sama_2280 0.46 -0.9 2,746,155 - fliA Sama_2280 0.46 -2.3 2,746,235 - fliA Sama_2280 0.57 -1.9 2,746,261 - fliA Sama_2280 0.60 -1.5 2,746,323 + fliA Sama_2280 0.69 -1.3 2,746,430 - fliA Sama_2280 0.84 -2.1 2,746,430 - fliA Sama_2280 0.84 -1.3 2,746,455 + fliA Sama_2280 0.87 -0.5 2,746,455 + fliA Sama_2280 0.87 -1.1 2,746,456 - fliA Sama_2280 0.88 -0.9 2,746,456 - fliA Sama_2280 0.88 -2.1 2,746,456 - fliA Sama_2280 0.88 -2.1 2,746,456 - fliA Sama_2280 0.88 -1.3 2,746,456 - fliA Sama_2280 0.88 -1.9 2,746,487 + +1.5 2,746,509 + -0.9 2,746,510 - -2.4 2,746,525 - -1.1 2,746,525 - -2.6 2,746,526 + +1.5 2,746,527 - -3.5 2,746,527 - -3.4 2,746,540 - -3.7 2,746,540 - -3.1 2,746,578 - -0.1 2,746,578 - -2.4 2,746,628 - Sama_2281 0.10 -1.1 2,746,646 - Sama_2281 0.12 -1.1 2,746,646 - Sama_2281 0.12 -2.4 2,746,663 - Sama_2281 0.14 -1.1 2,746,698 - Sama_2281 0.18 +1.5 2,746,698 - Sama_2281 0.18 -3.3 2,746,715 - Sama_2281 0.20 -0.5 2,746,719 - Sama_2281 0.21 -1.1 2,746,838 - Sama_2281 0.34 -2.4 2,746,847 - Sama_2281 0.35 -1.3 2,746,847 - Sama_2281 0.35 -2.6 2,746,847 - Sama_2281 0.35 +0.3 2,746,941 - Sama_2281 0.46 +1.5 2,746,941 - Sama_2281 0.46 -0.9 2,746,941 - Sama_2281 0.46 -0.5 2,746,941 - Sama_2281 0.46 -1.9 2,746,941 - Sama_2281 0.46 -0.5 2,746,941 - Sama_2281 0.46 -1.3 2,746,944 - Sama_2281 0.46 -2.1 2,746,944 - Sama_2281 0.46 -2.0 2,746,944 - Sama_2281 0.46 -2.5 2,747,018 - Sama_2281 0.54 -0.5 2,747,114 - Sama_2281 0.65 -0.5 2,747,124 - Sama_2281 0.66 -2.4 2,747,124 - Sama_2281 0.66 -1.1 2,747,184 - Sama_2281 0.73 +0.5 2,747,300 - Sama_2281 0.86 +0.1 2,747,374 - -2.0 2,747,390 - -0.1 2,747,420 - -3.4 2,747,426 - -2.4 2,747,460 - -0.5 2,747,460 - -0.1 2,747,460 - -2.0 2,747,460 - -2.6 2,747,460 - -1.5 2,747,460 - -0.5 2,747,460 - -2.7 2,747,460 - -1.5 2,747,460 - -1.9 2,747,460 - -2.9 2,747,460 - -1.3 2,747,544 - -1.3
Or see this region's nucleotide sequence