Strain Fitness in Shewanella amazonensis SB2B around Sama_2217

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,678,241	+		Sama_2215	0.50	+1.6
2,678,346	+		Sama_2215	0.61	+0.0
2,678,393	+		Sama_2215	0.67	+2.7
2,678,393	+		Sama_2215	0.67	+1.9
2,678,393	+		Sama_2215	0.67	-2.9
2,678,464	-		Sama_2215	0.75	-0.3
2,678,487	+		Sama_2215	0.77	-2.0
2,678,493	+		Sama_2215	0.78	+0.7
2,678,494	-		Sama_2215	0.78	-0.1
2,678,549	+		Sama_2215	0.84	-0.9
2,678,568	-		Sama_2215	0.87	-0.1
2,678,568	-		Sama_2215	0.87	-1.3
2,678,610	+				-1.6
2,678,611	-				+1.9
2,678,728	+				+0.9
2,678,756	+				-0.2
2,678,901	-		Sama_2216	0.38	-1.4
2,679,037	+		Sama_2216	0.67	+3.1
2,679,037	+		Sama_2216	0.67	+0.1
2,679,102	-		Sama_2216	0.81	+1.2
2,679,102	-		Sama_2216	0.81	+0.2
2,679,102	-		Sama_2216	0.81	+2.2
2,679,102	-		Sama_2216	0.81	-0.2
2,679,139	-		Sama_2216	0.89	+0.4
2,679,160	-				+1.4
2,679,160	-				+0.6
2,679,160	-				+0.3
2,679,160	-				+2.2
2,679,172	-				-0.9
2,679,172	-				+1.0
2,679,172	-				+1.4
2,679,172	-				+1.0
2,679,181	+				+0.8
2,679,194	-				-0.2
2,679,200	+				+2.1
2,679,220	-				-0.9
2,679,220	-				+0.4
2,679,261	+				-0.2
2,679,262	-				+1.2
2,679,262	-				+2.4
2,679,277	-				+1.6
2,679,277	-				-0.9
2,679,282	+				+1.4
2,679,282	+				-2.0
2,679,283	-				+2.4
2,679,284	+				-0.6
2,679,284	+				-0.9
2,679,284	+				+0.7
2,679,284	+				+0.1
2,679,285	-				-0.4
2,679,285	-				-1.7
2,679,285	-				-0.9
2,679,285	-				-2.2
2,679,285	-				-0.9
2,679,285	-				+1.6
2,679,296	+				-1.2
2,679,296	+				+0.4
2,679,297	-				-2.0
2,679,297	-				-0.2
2,679,302	-				-1.9
2,679,302	-				-1.6
2,679,302	-				+4.5
2,679,332	-				+0.6
2,679,332	-				+0.1
2,679,332	-				+0.4
2,679,342	+				-1.6
2,679,343	-				+2.6
2,679,343	-				-0.7
2,679,343	-				+0.9
2,679,343	-				+0.7
2,679,371	+				+3.2
2,679,372	-				+2.6
2,679,372	-				+2.0
2,679,372	-				+0.3
2,679,452	+		Sama_2217	0.12	-1.2
2,679,453	-		Sama_2217	0.12	-1.4
2,679,453	-		Sama_2217	0.12	-0.6
2,679,453	-		Sama_2217	0.12	+0.4
2,679,453	-		Sama_2217	0.12	-1.9
2,679,453	-		Sama_2217	0.12	-3.0
2,679,454	+		Sama_2217	0.12	+0.3
2,679,454	+		Sama_2217	0.12	+2.1
2,679,454	+		Sama_2217	0.12	+0.1
2,679,454	+		Sama_2217	0.12	-2.0
2,679,454	+		Sama_2217	0.12	+0.1
2,679,455	-		Sama_2217	0.12	+2.0
2,679,455	-		Sama_2217	0.12	+0.7
2,679,455	-		Sama_2217	0.12	+1.3
2,679,455	-		Sama_2217	0.12	-2.3
2,679,455	-		Sama_2217	0.12	-1.4
2,679,455	-		Sama_2217	0.12	-1.2
2,679,455	-		Sama_2217	0.12	+1.6
2,679,455	-		Sama_2217	0.12	+1.6
2,679,514	+		Sama_2217	0.15	+0.5
2,679,579	-		Sama_2217	0.18	-1.4
2,679,607	+		Sama_2217	0.19	+0.4
2,679,621	+		Sama_2217	0.20	+0.9
2,679,622	-		Sama_2217	0.20	-0.2
2,679,640	-		Sama_2217	0.21	+0.1
2,679,678	+		Sama_2217	0.23	+0.8
2,679,679	-		Sama_2217	0.23	+0.9
2,679,679	-		Sama_2217	0.23	+0.2
2,679,679	-		Sama_2217	0.23	+2.3
2,679,679	-		Sama_2217	0.23	+0.8
2,679,679	-		Sama_2217	0.23	+2.4
2,679,679	-		Sama_2217	0.23	+0.4
2,679,679	-		Sama_2217	0.23	-1.2
2,679,680	+		Sama_2217	0.23	-1.2
2,679,680	+		Sama_2217	0.23	-0.0
2,679,680	+		Sama_2217	0.23	-0.9
2,679,680	+		Sama_2217	0.23	-1.2
2,679,680	+		Sama_2217	0.23	+2.7
2,679,680	+		Sama_2217	0.23	+3.7
2,679,681	-		Sama_2217	0.23	+2.6
2,679,681	-		Sama_2217	0.23	+2.0
2,679,681	-		Sama_2217	0.23	+4.7
2,679,681	-		Sama_2217	0.23	+1.6
2,679,681	-		Sama_2217	0.23	+0.7
2,679,681	-		Sama_2217	0.23	+0.1
2,679,701	+		Sama_2217	0.24	+3.1
2,679,702	-		Sama_2217	0.24	+0.7
2,679,702	-		Sama_2217	0.24	-1.6
2,679,702	-		Sama_2217	0.24	-1.4
2,679,752	+		Sama_2217	0.26	-3.1
2,679,753	-		Sama_2217	0.26	+1.2
2,679,809	+		Sama_2217	0.29	+0.1
2,679,810	-		Sama_2217	0.29	+0.4
2,679,901	+		Sama_2217	0.33	+3.0
2,679,902	-		Sama_2217	0.33	-0.6
2,679,902	-		Sama_2217	0.33	-0.0
2,679,936	+		Sama_2217	0.35	-1.2
2,679,936	+		Sama_2217	0.35	+3.2
2,679,937	-		Sama_2217	0.35	-1.6
2,679,937	-		Sama_2217	0.35	-0.5
2,679,937	-		Sama_2217	0.35	+0.8
2,680,130	+		Sama_2217	0.44	-2.2
2,680,131	-		Sama_2217	0.44	+1.3
2,680,131	-		Sama_2217	0.44	-2.2
2,680,131	-		Sama_2217	0.44	-1.9
2,680,207	-		Sama_2217	0.48	-0.9
2,680,217	-		Sama_2217	0.48	-1.9
2,680,224	+		Sama_2217	0.48	+0.7
2,680,224	+		Sama_2217	0.48	-0.2
2,680,225	-		Sama_2217	0.48	+0.3
2,680,226	+		Sama_2217	0.48	+0.4
2,680,226	+		Sama_2217	0.48	+0.0
2,680,226	+		Sama_2217	0.48	-1.7
2,680,227	-		Sama_2217	0.49	+1.1
2,680,227	-		Sama_2217	0.49	+1.4
2,680,251	+		Sama_2217	0.50	+3.1
2,680,251	+		Sama_2217	0.50	+0.3
2,680,251	+		Sama_2217	0.50	-1.2
2,680,251	+		Sama_2217	0.50	+2.4
2,680,252	-		Sama_2217	0.50	+2.5
2,680,252	-		Sama_2217	0.50	-1.7
2,680,252	-		Sama_2217	0.50	-0.9
2,680,260	+		Sama_2217	0.50	-0.2
2,680,261	-		Sama_2217	0.50	+0.7
2,680,313	+		Sama_2217	0.53	+0.4
2,680,314	-		Sama_2217	0.53	-2.0
2,680,314	-		Sama_2217	0.53	+0.1
2,680,314	-		Sama_2217	0.53	+2.4
2,680,349	+		Sama_2217	0.54	+1.1
2,680,352	+		Sama_2217	0.54	-0.2
2,680,352	+		Sama_2217	0.54	+0.4
2,680,352	+		Sama_2217	0.54	-0.6
2,680,352	+		Sama_2217	0.54	+2.0
2,680,359	-		Sama_2217	0.55	-1.9
2,680,359	-		Sama_2217	0.55	-0.2
2,680,417	+		Sama_2217	0.58	+2.4
2,680,418	-		Sama_2217	0.58	+0.4
2,680,418	-		Sama_2217	0.58	-1.4
2,680,427	+		Sama_2217	0.58	+0.4
2,680,482	-		Sama_2217	0.61	+0.7
2,680,482	-		Sama_2217	0.61	-2.2
2,680,515	-		Sama_2217	0.62	-0.3
2,680,615	-		Sama_2217	0.67	+2.0
2,680,672	-		Sama_2217	0.70	-0.2
2,680,716	+		Sama_2217	0.72	+1.1
2,680,716	+		Sama_2217	0.72	+1.4
2,680,717	-		Sama_2217	0.72	-2.7
2,680,745	+		Sama_2217	0.73	-0.6
2,680,746	-		Sama_2217	0.73	-1.4
2,680,746	-		Sama_2217	0.73	-0.2
2,680,746	-		Sama_2217	0.73	-0.6
2,680,768	-		Sama_2217	0.74	+1.8
2,680,768	-		Sama_2217	0.74	+2.3
2,680,774	-		Sama_2217	0.74	-1.9
2,680,789	+		Sama_2217	0.75	-1.2
2,680,796	-		Sama_2217	0.75	-0.5
2,680,831	-		Sama_2217	0.77	-0.6
2,680,831	-		Sama_2217	0.77	+3.4
2,680,852	-		Sama_2217	0.78	+2.4
2,680,852	-		Sama_2217	0.78	+3.6
2,680,963	-		Sama_2217	0.83	+0.9
2,680,963	-		Sama_2217	0.83	-1.2
2,680,987	-		Sama_2217	0.84	-1.2
2,681,133	+				+1.2
2,681,154	+				-0.2
2,681,155	-				-2.0
2,681,198	+				-0.2
2,681,198	+				+0.9
2,681,199	-				+0.4
2,681,227	-				+0.6
2,681,227	-				+0.4
2,681,227	-				+2.4
2,681,227	-				-0.4
2,681,310	+				+2.7
2,681,310	+				+0.6
2,681,310	+				+2.3
2,681,310	+				+1.5
2,681,311	-				+0.9
2,681,311	-				-1.2
2,681,311	-				+0.2
2,681,316	+				+1.4
2,681,317	-				+0.3
2,681,317	-				+0.9
2,681,317	-				-0.2
2,681,317	-				+1.5
2,681,338	-				+0.1
2,681,364	-				+1.4
2,681,408	+				-0.9
2,681,436	+				-0.9
2,681,442	+				+1.8
2,681,443	-				+0.4
2,681,443	-				+0.7
2,681,443	-				+1.2
2,681,521	-				-0.1
2,681,521	-				-1.1
2,681,535	+				+1.6
2,681,535	+				-1.4
2,681,536	-				+0.7
2,681,564	-				+0.0
2,681,620	-				-0.6
2,681,631	+				+0.5
2,681,632	-				+3.4
2,681,632	-				-2.2
2,681,705	-				-2.7
2,681,729	-				+3.2
2,681,729	-				+1.7
2,681,741	+				+0.6
2,681,742	-				-0.9
2,681,742	-				+1.9
2,681,779	-				-0.6
2,681,797	-				-0.5
2,681,821	-		Sama_2218	0.13	+0.4
2,681,828	+		Sama_2218	0.14	+0.8
2,681,833	-		Sama_2218	0.14	+2.4
2,681,864	+		Sama_2218	0.19	+2.2
2,681,864	+		Sama_2218	0.19	+0.0
2,681,877	+		Sama_2218	0.21	-1.7
2,681,878	-		Sama_2218	0.21	-0.2
2,681,878	-		Sama_2218	0.21	-0.9
2,681,985	-		Sama_2218	0.38	-0.6
2,682,033	-		Sama_2218	0.46	+0.4
2,682,162	-		Sama_2218	0.66	+0.2
2,682,162	-		Sama_2218	0.66	+1.2
2,682,245	-		Sama_2218	0.79	+0.4
2,682,245	-		Sama_2218	0.79	-1.7
2,682,248	+		Sama_2218	0.79	-0.2
2,682,249	-		Sama_2218	0.79	-0.9
2,682,295	+		Sama_2218	0.86	-0.2