Strain Fitness in Shewanella amazonensis SB2B around Sama_0981

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,185,545	+		Sama_0980	0.62	+5.3
1,185,545	+		Sama_0980	0.62	+5.7
1,185,593	+		Sama_0980	0.64	+4.2
1,185,593	+		Sama_0980	0.64	+4.0
1,185,594	-		Sama_0980	0.64	+5.5
1,185,602	+		Sama_0980	0.65	+4.0
1,185,603	-		Sama_0980	0.65	+5.7
1,185,603	-		Sama_0980	0.65	+6.8
1,185,616	-		Sama_0980	0.65	+4.5
1,185,685	+		Sama_0980	0.68	+6.4
1,185,685	+		Sama_0980	0.68	+4.8
1,185,686	-		Sama_0980	0.68	+5.9
1,185,688	-		Sama_0980	0.68	+5.3
1,185,789	-		Sama_0980	0.73	+4.8
1,185,789	-		Sama_0980	0.73	+4.4
1,185,789	-		Sama_0980	0.73	+4.8
1,185,789	-		Sama_0980	0.73	+4.2
1,185,795	+		Sama_0980	0.73	+4.7
1,185,796	-		Sama_0980	0.73	+1.2
1,185,796	-		Sama_0980	0.73	+3.1
1,185,823	-		Sama_0980	0.74	+6.6
1,185,825	+		Sama_0980	0.74	+3.3
1,185,854	+		Sama_0980	0.75	+6.4
1,185,854	+		Sama_0980	0.75	+5.7
1,185,854	+		Sama_0980	0.75	+4.5
1,185,855	-		Sama_0980	0.75	+4.6
1,185,860	+		Sama_0980	0.76	+4.2
1,185,861	-		Sama_0980	0.76	+5.1
1,185,866	+		Sama_0980	0.76	+6.5
1,185,866	+		Sama_0980	0.76	+4.8
1,185,866	+		Sama_0980	0.76	+5.6
1,185,902	+		Sama_0980	0.77	+2.9
1,185,903	-		Sama_0980	0.77	+4.6
1,185,988	-		Sama_0980	0.81	+0.2
1,185,988	-		Sama_0980	0.81	+5.2
1,185,988	-		Sama_0980	0.81	+5.2
1,185,988	-		Sama_0980	0.81	+5.1
1,185,988	-		Sama_0980	0.81	+3.8
1,186,018	-		Sama_0980	0.82	+2.3
1,186,031	+		Sama_0980	0.83	+4.0
1,186,031	+		Sama_0980	0.83	+4.2
1,186,045	+		Sama_0980	0.83	+4.0
1,186,045	+		Sama_0980	0.83	+2.6
1,186,046	-		Sama_0980	0.83	+5.3
1,186,046	-		Sama_0980	0.83	+5.0
1,186,046	-		Sama_0980	0.83	+5.3
1,186,046	-		Sama_0980	0.83	+5.3
1,186,134	+		Sama_0980	0.87	+5.7
1,186,134	+		Sama_0980	0.87	+4.2
1,186,135	-		Sama_0980	0.87	+5.5
1,186,149	+		Sama_0980	0.88	+3.4
1,186,150	-		Sama_0980	0.88	+4.2
1,186,150	-		Sama_0980	0.88	+4.9
1,186,150	-		Sama_0980	0.88	+4.0
1,186,150	-		Sama_0980	0.88	+5.2
1,186,150	-		Sama_0980	0.88	+4.4
1,186,162	-		Sama_0980	0.88	+4.8
1,186,304	+				+3.8
1,186,304	+				+4.4
1,186,409	+				+4.1
1,186,409	+				+3.8
1,186,409	+				+1.5
1,186,409	+				+2.7
1,186,410	-				-0.9
1,186,410	-				+4.2
1,186,410	-				+1.5
1,186,410	-				+4.2
1,186,410	-				+4.3
1,186,410	-				+6.7
1,186,442	+				+4.4
1,186,442	+				+5.8
1,186,442	+				+6.1
1,186,443	-				+6.5
1,186,443	-				+2.1
1,186,443	-				+4.4
1,186,481	+				+5.2
1,186,482	-				-1.8
1,186,482	-				+0.4
1,186,486	+				+4.0
1,186,486	+				+2.1
1,186,486	+				+5.0
1,186,487	-				-1.4
1,186,487	-				-3.8
1,186,487	-				-2.5
1,186,511	+				+4.3
1,186,511	+				+2.4
1,186,511	+				+3.7
1,186,511	+				+3.0
1,186,511	+				+5.7
1,186,511	+				+3.2
1,186,511	+				+2.1
1,186,511	+				+5.4
1,186,512	-				-2.3
1,186,514	-				-2.1
1,186,564	+				-2.5
1,186,565	-				+0.2
1,186,568	+				-0.3
1,186,568	+				+1.8
1,186,569	-				+3.4
1,186,776	+		Sama_0981	0.17	+0.2
1,186,776	+		Sama_0981	0.17	-0.1
1,186,808	+		Sama_0981	0.19	+0.7
1,186,809	-		Sama_0981	0.19	-1.0
1,186,809	-		Sama_0981	0.19	-0.3
1,186,809	-		Sama_0981	0.19	-1.1
1,186,809	-		Sama_0981	0.19	-0.3
1,186,861	-		Sama_0981	0.23	-2.6
1,186,868	+		Sama_0981	0.24	+0.2
1,186,869	-		Sama_0981	0.24	-0.6
1,186,869	-		Sama_0981	0.24	-1.6
1,186,912	+		Sama_0981	0.27	+3.9
1,186,912	+		Sama_0981	0.27	-0.8
1,186,912	+		Sama_0981	0.27	+0.3
1,186,912	+		Sama_0981	0.27	+0.7
1,186,913	-		Sama_0981	0.27	+0.1
1,186,913	-		Sama_0981	0.27	-2.3
1,186,913	-		Sama_0981	0.27	-1.9
1,186,974	+		Sama_0981	0.32	+2.7
1,186,974	+		Sama_0981	0.32	-0.4
1,186,975	-		Sama_0981	0.32	+2.0
1,186,985	+		Sama_0981	0.32	+1.2
1,186,985	+		Sama_0981	0.32	-0.2
1,186,986	-		Sama_0981	0.32	+1.2
1,187,054	+		Sama_0981	0.37	-0.2
1,187,170	-		Sama_0981	0.46	-2.2
1,187,241	+		Sama_0981	0.51	-1.9
1,187,241	+		Sama_0981	0.51	+1.0
1,187,241	+		Sama_0981	0.51	-1.1
1,187,242	-		Sama_0981	0.51	-0.8
1,187,242	-		Sama_0981	0.51	-0.3
1,187,242	-		Sama_0981	0.51	-0.6
1,187,491	-		Sama_0981	0.69	+0.2
1,187,618	+		Sama_0981	0.79	-1.4
1,187,630	+		Sama_0981	0.80	+0.2
1,187,630	+		Sama_0981	0.80	-1.1
1,187,663	+		Sama_0981	0.82	-0.3
1,187,663	+		Sama_0981	0.82	-0.7
1,187,663	+		Sama_0981	0.82	-0.3
1,187,663	+		Sama_0981	0.82	+1.5
1,187,664	-		Sama_0981	0.82	-0.3
1,187,664	-		Sama_0981	0.82	-2.8
1,187,883	-				-0.0
1,188,031	-		Sama_0982	0.24	-2.1
1,188,031	-		Sama_0982	0.24	-0.8
1,188,031	-		Sama_0982	0.24	-2.3
1,188,041	+		Sama_0982	0.27	-1.8
1,188,042	-		Sama_0982	0.27	-1.8
1,188,042	-		Sama_0982	0.27	-1.8
1,188,056	+		Sama_0982	0.31	+0.5
1,188,056	+		Sama_0982	0.31	-0.8
1,188,057	-		Sama_0982	0.31	+1.4
1,188,102	-		Sama_0982	0.44	+0.2
1,188,273	-		Sama_0982	0.90	+0.3
1,188,296	+				+0.7
1,188,297	-				+0.3
1,188,297	-				+0.4
1,188,346	+				-1.1
1,188,352	+				+1.2
1,188,353	-				-1.6
1,188,353	-				+1.1
1,188,364	+				+1.2
1,188,365	-				-1.1
1,188,373	+				+0.6
1,188,393	+				+0.2
1,188,393	+				+0.9
1,188,393	+				+3.8
1,188,394	-				+0.8
1,188,403	-				-1.1
1,188,404	+				+0.4
1,188,410	-				-0.5
1,188,481	+				+0.1
1,188,481	+				+1.4
1,188,482	-				-0.8
1,188,483	+				-0.8
1,188,483	+				+0.2
1,188,483	+				+0.7
1,188,484	-				+1.2
1,188,484	-				+1.1
1,188,484	-				-0.5
1,188,511	-				-1.7
1,188,511	-				+1.1
1,188,522	+				-1.1
1,188,522	+				+1.7
1,188,522	+				+0.4
1,188,554	+				+0.5
1,188,577	-				-1.3
1,188,577	-				-0.5
1,188,665	+		Sama_0983	0.21	-1.3
1,188,666	-		Sama_0983	0.21	+0.6
1,188,666	-		Sama_0983	0.21	-1.1
1,188,776	+		Sama_0983	0.37	+0.1
1,188,776	+		Sama_0983	0.37	-0.0
1,188,777	-		Sama_0983	0.37	-1.3
1,188,777	-		Sama_0983	0.37	-1.3
1,188,777	-		Sama_0983	0.37	-2.6
1,188,810	+		Sama_0983	0.41	+0.3
1,188,810	+		Sama_0983	0.41	+0.3
1,188,810	+		Sama_0983	0.41	+0.9
1,188,810	+		Sama_0983	0.41	-0.4
1,188,810	+		Sama_0983	0.41	+1.6
1,188,811	-		Sama_0983	0.41	-2.2
1,188,811	-		Sama_0983	0.41	+0.9
1,188,811	-		Sama_0983	0.41	-1.1
1,188,811	-		Sama_0983	0.41	-0.7
1,188,833	+		Sama_0983	0.45	+0.5
1,188,872	+		Sama_0983	0.50	-1.6